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v0.1.0-rc0

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@LucaMarconato LucaMarconato released this 24 Mar 04:20
· 363 commits to main since this release

[0.1.0] - 2024-03-24

Added

  • (MCMICRO) support for TMAs (such as the data of exemplar-002)
  • (Xenium) support for post-xenium aligned images (IF, HE)
  • (Xenium) reader for the selection coordinates file from the Xenium Explorer
  • (DBiT-seq) reader
  • converter functions experimental.to_legacy_anndata() and experimental.from_legacy_anndata()
  • (Visium) support for raw reads (capture locations not under tissue)

Fixed

  • (MERSCOPE) don't try to load unexisting elements #87
  • (Visium) fixed axes ordering
  • (Xenium) fixed index (fail on write)
  • (Xenium) renamed cells_as_shapes to cells_as_circles; set default to True