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seguid · Apr 29, 2024 · abea266 · abea266
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 752649df29cd212dfbc6e8f4a85dc6ed
+config: 4c6c8c3132741599380b2ba1ca886753
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/index.html b/_modules/index.html
@@ -54,11 +54,11 @@ <h3>Navigation</h3>
 <hr />
 <ul>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna">Home page</a></li>
+    <li class="toctree-l1"><a href="https://seguid.org">Home page</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna?tab=readme-ov-file#-pydna">Source code</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python">Source code</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna/issues">Issue Tracker</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python/issues">Issue Tracker</a></li>
 
 </ul>
 <div class="relations">

diff --git a/_modules/seguid/_chksum.html b/_modules/seguid/_chksum.html
@@ -334,11 +334,11 @@ <h3>Navigation</h3>
 <hr />
 <ul>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna">Home page</a></li>
+    <li class="toctree-l1"><a href="https://seguid.org">Home page</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna?tab=readme-ov-file#-pydna">Source code</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python">Source code</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna/issues">Issue Tracker</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python/issues">Issue Tracker</a></li>
 
 </ul>
 <div class="relations">

diff --git a/genindex.html b/genindex.html
@@ -116,11 +116,11 @@ <h3>Navigation</h3>
 <hr />
 <ul>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna">Home page</a></li>
+    <li class="toctree-l1"><a href="https://seguid.org">Home page</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna?tab=readme-ov-file#-pydna">Source code</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python">Source code</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna/issues">Issue Tracker</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python/issues">Issue Tracker</a></li>
 
 </ul>
 <div class="relations">

diff --git a/index.html b/index.html
@@ -134,8 +134,8 @@ <h3>SEGUID checksums for linear, circular, single- and double-stranded sequences
 </tr>
 </tbody>
 </table>
-<p>Four functions for calculations of SEGUID v2 checksums for biological sequences with
-linear or circular topologies and a single of two complementary strands are provided.</p>
+<p>Four SEGUID v2 checksum functions for biological sequences with linear or circular
+topology and a single or two complementary strands.</p>
 <p>A detailed description of the algorithms can be found in Pereira et al. (2024).
 Implementations of these functions in other programming languages cand be found
 at <a class="reference external" href="https://www.seguid.org/">seguid.org</a>.</p>
@@ -147,15 +147,15 @@ <h3>SEGUID checksums for linear, circular, single- and double-stranded sequences
 </section>
 <section id="usage">
 <h3>Usage<a class="headerlink" href="#usage" title="Link to this heading">¶</a></h3>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">lsseguid</span><span class="p">(</span><span class="n">seq</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="n">c</span><span class="p">(</span><span class="s2">&quot;long&quot;</span><span class="p">,</span> <span class="s2">&quot;short&quot;</span><span class="p">,</span> <span class="s2">&quot;both&quot;</span><span class="p">))</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">lsseguid</span><span class="p">(</span><span class="n">seq</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="s2">&quot;long&quot;</span><span class="p">)</span>
 
-<span class="n">csseguid</span><span class="p">(</span><span class="n">seq</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="n">c</span><span class="p">(</span><span class="s2">&quot;long&quot;</span><span class="p">,</span> <span class="s2">&quot;short&quot;</span><span class="p">,</span> <span class="s2">&quot;both&quot;</span><span class="p">))</span>
+<span class="n">csseguid</span><span class="p">(</span><span class="n">seq</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="s2">&quot;long&quot;</span><span class="p">)</span>
 
-<span class="n">ldseguid</span><span class="p">(</span><span class="n">watson</span><span class="p">,</span> <span class="n">crick</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="n">c</span><span class="p">(</span><span class="s2">&quot;long&quot;</span><span class="p">,</span> <span class="s2">&quot;short&quot;</span><span class="p">,</span> <span class="s2">&quot;both&quot;</span><span class="p">))</span>
+<span class="n">ldseguid</span><span class="p">(</span><span class="n">watson</span><span class="p">,</span> <span class="n">crick</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="s2">&quot;long&quot;</span><span class="p">)</span>
 
-<span class="n">cdseguid</span><span class="p">(</span><span class="n">watson</span><span class="p">,</span> <span class="n">crick</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="n">c</span><span class="p">(</span><span class="s2">&quot;long&quot;</span><span class="p">,</span> <span class="s2">&quot;short&quot;</span><span class="p">,</span> <span class="s2">&quot;both&quot;</span><span class="p">))</span>
+<span class="n">cdseguid</span><span class="p">(</span><span class="n">watson</span><span class="p">,</span> <span class="n">crick</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="s2">&quot;long&quot;</span><span class="p">)</span>
 
-<span class="n">seguid</span><span class="p">(</span><span class="n">seq</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="n">c</span><span class="p">(</span><span class="s2">&quot;long&quot;</span><span class="p">,</span> <span class="s2">&quot;short&quot;</span><span class="p">,</span> <span class="s2">&quot;both&quot;</span><span class="p">))</span>
+<span class="n">seguid</span><span class="p">(</span><span class="n">seq</span><span class="p">,</span> <span class="n">alphabet</span><span class="o">=</span><span class="s2">&quot;</span><span class="si">{DNA}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">form</span><span class="o">=</span><span class="s2">&quot;long&quot;</span><span class="p">)</span>
 </pre></div>
 </div>
 </section>
@@ -358,11 +358,11 @@ <h3>Navigation</h3>
 <hr />
 <ul>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna">Home page</a></li>
+    <li class="toctree-l1"><a href="https://seguid.org">Home page</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna?tab=readme-ov-file#-pydna">Source code</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python">Source code</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna/issues">Issue Tracker</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python/issues">Issue Tracker</a></li>
 
 </ul>
 <div class="relations">

diff --git a/py-modindex.html b/py-modindex.html
@@ -76,11 +76,11 @@ <h3>Navigation</h3>
 <hr />
 <ul>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna">Home page</a></li>
+    <li class="toctree-l1"><a href="https://seguid.org">Home page</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna?tab=readme-ov-file#-pydna">Source code</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python">Source code</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna/issues">Issue Tracker</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python/issues">Issue Tracker</a></li>
 
 </ul>
 <div class="relations">

diff --git a/search.html b/search.html
@@ -85,11 +85,11 @@ <h3>Navigation</h3>
 <hr />
 <ul>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna">Home page</a></li>
+    <li class="toctree-l1"><a href="https://seguid.org">Home page</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna?tab=readme-ov-file#-pydna">Source code</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python">Source code</a></li>
 
-    <li class="toctree-l1"><a href="https://github.com/BjornFJohansson/pydna/issues">Issue Tracker</a></li>
+    <li class="toctree-l1"><a href="https://github.com/seguid/seguid-python/issues">Issue Tracker</a></li>
 
 </ul>
 <div class="relations">