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Spell out citations for non-Wikipedia references
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HenrikBengtsson committed Apr 23, 2024
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Four functions for calculations of SEGUID v2 checksums for biological sequences with
linear or circular topologies and a single of two complementary strands are provided.
A detailed description of the algorithms can be found in Pereira et al. 2024 (2).
A detailed description of the algorithms can be found in Pereira, et al. (2024).
Implementations of these functions in other programming languages cand be found
at `seguid.org <https://www.seguid.org/>`_.
The function ``seguid()`` that calculates checksum according to the original SEGUID v1 specification (1)
The function ``seguid()`` that calculates checksum according to the original SEGUID v1 specification (Babnigg & Giometti, 2006)
is also provided.
This package works without external dependencies, but ``csseguid()`` and ``cdseguid()``
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Base64 and Base64url encodings
------------------------------
The Base64url encoding is the Base64 encoding with non-URL-safe characters substituted with URL-safe ones (3).
The Base64url encoding is the Base64 encoding with non-URL-safe characters substituted with URL-safe ones (Josefsson, 2006).
Specifically, the plus symbol (``+``) is replaced by the minus symbol (``-``), and the forward slash (``/``) is replaced
by the underscore symbol (``_``).
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