Skip to content

Commit

Permalink
Updated documentation for Raw Data
Browse files Browse the repository at this point in the history
  • Loading branch information
Steven Sutcliffe committed Apr 28, 2022
1 parent 0ba6ca1 commit ec726ce
Show file tree
Hide file tree
Showing 2 changed files with 7,052 additions and 0 deletions.
7,024 changes: 7,024 additions & 0 deletions 0_RawData/RAWReads_multiqc_report.html
View file

Large diffs are not rendered by default.

28 changes: 28 additions & 0 deletions 0_RawData/SraRunInfo.txt
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
Run LibrarySource SampleName Day Replicate bases spots_with_mates avgLength size_MB AssemblyName download_path Experiment LibraryName LibraryStrategy LibrarySelection LibraryLayout InsertSize InsertDev Platform Model SRAStudy BioProject Study_Pubmed_id ProjectID Sample BioSample SampleType TaxID ScientificName g1k_pop_code source g1k_analysis_group Subject_ID Sex Disease Tumor Affection_Status Analyte_Type Histological_Type Body_Site CenterName Submission dbgap_study_accession Consent RunHash ReadHash
SRR828645 METAGENOMIC BLS020308_1014-01 182 1 2171503434 10750017 202 1570 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-8/SRR828645/SRR828645.4 SRX266274 WGS RANDOM PAIRED 100 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS413351 SAMN02044682 simple 408170 human gut metagenome no UPENNBL SRA073215 public 39FB73AEC09502C9F97784E5016E37E4 5B0F5B4244E24191B844E0E6234C33DD
SRR828661 METAGENOMIC BLS020309_1014-02 852 1 2460700572 12181686 202 1762 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-8/SRR828661/SRR828661.4 SRX266505 WGS RANDOM PCR PAIRED 100 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS413515 SAMN02044683 simple 408170 human gut metagenome no UPENNBL SRA073215 public 01E0E224DE275418DBFDC44BBCEE7CCF EDAFA812F055F64070EEB44A6D6D9CF0
SRR828660 METAGENOMIC BLS020310_1014-03 882 1 3466062046 17158723 202 2534 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-8/SRR828660/SRR828660.4 SRX266506 WGS RANDOM PCR PAIRED 100 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS413516 SAMN02044684 simple 408170 human gut metagenome no UPENNBL SRA073215 public 36A2DE42AE9D1D9ED31B9F9128D5B0A4 D4D40DF730C69B5F297D9AE9CD97F1CC
SRR829033 VIRAL RNA BLS020813_d00-1 0 1 3039481274 15046937 202 2260 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-8/SRR829033/SRR829033.4 SRX266874 WGS RANDOM PCR PAIRED 100 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS413839 SAMN02044685 simple 408170 human gut metagenome no UPENNBL SRA073215 public 52980DA7A7C18BB9E782A0762689363C 46D47C97B6A0752CE8CD510980254E1B
SRR829867 VIRAL RNA BLS020814_d00-2 0 2 3640108478 18020339 202 2721 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-8/SRR829867/SRR829867.4 SRX266875 WGS RANDOM PCR PAIRED 100 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS413840 SAMN02044686 simple 408170 human gut metagenome no UPENNBL SRA073215 public 778738A4B584BF5B13788934B487AC4D 20CBBFFB0703AF80983A94307EBA51F6
SRR935337 VIRAL RNA BLS020815_d01-1 180 1 3636897082 18004441 202 2717 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935337/SRR935337.3 SRX322901 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415862 SAMN02044687 simple 408170 human gut metagenome no UPENNBL SRA073215 public 61FF374AAA11617396864A21048F53BB 01F3EFB69078BC341F4F3DC236547E91
SRR935339 VIRAL RNA BLS020816_d02-1 181 1 3498991076 17321738 202 2611 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935339/SRR935339.3 SRX322902 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415863 SAMN02044688 simple 408170 human gut metagenome no UPENNBL SRA073215 public 3EE3E4F704272E67D123CB8D1CCBDDF4 DABD92166125E63900FFB3209DF16B53
SRR935340 VIRAL RNA BLS020817_d03-1 182 1 2413493778 11947989 202 1797 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935340/SRR935340.3 SRX322907 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415864 SAMN02044689 simple 408170 human gut metagenome no UPENNBL SRA073215 public 93C23DAE2B540E2DFEEED7CCC81F3845 B6AED0BA6A89F417397E765BB8B17C39
SRR935341 VIRAL RNA BLS020818_d03-2 182 2 2531504198 12532199 202 1879 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935341/SRR935341.3 SRX322908 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415865 SAMN02044690 simple 408170 human gut metagenome no UPENNBL SRA073215 public EF1234CD4E0C046818D5FAC8939196C1 212EEC6C9F11D0BC577ECBE617E88581
SRR935342 VIRAL RNA BLS020819_d04-1 183 1 2717830210 13454605 202 2021 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935342/SRR935342.3 SRX322910 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415866 SAMN02044691 simple 408170 human gut metagenome no UPENNBL SRA073215 public 8660A54B6DF8999F202808A660984E9B AE0B7A4B2A91F950655703B8EBDD1EB1
SRR829034 VIRAL RNA BLS020820_d05-1 184 1 2979802596 14751498 202 2000 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-8/SRR829034/SRR829034.4 SRX266876 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS413841 SAMN02044692 simple 408170 human gut metagenome male no UPENNBL SRA073215 public DDFB1D9EDB5B710B246E0E36C0F51CD8 2BD03C1425DE9926157F27D6D79B3A3B
SRR935364 VIRAL RNA BLS020821_d11-1 851 1 3681383542 18224671 202 2749 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935364/SRR935364.3 SRX322944 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415867 SAMN02044693 simple 408170 human gut metagenome no UPENNBL SRA073215 public C3E9C015F3C3C815F78B38CE681924F1 35AD4F62422F768402E61F806B83E87B
SRR935366 VIRAL RNA BLS020822_d11-2 851 2 4117997654 20386127 202 3072 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935366/SRR935366.3 SRX322945 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415868 SAMN02044694 simple 408170 human gut metagenome no UPENNBL SRA073215 public C941DEF6F2A864CFEAD361FF730CA7EC C0C5C6DDA6A03B955C600F0A3AFBF686
SRR935367 VIRAL RNA BLS020823_d12-1 852 1 4142121908 20505554 202 3092 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935367/SRR935367.3 SRX322946 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415869 SAMN02044695 simple 408170 human gut metagenome no UPENNBL SRA073215 public A3821F3031FABE3EB645D7FEAC9A75B0 D8793537E4EF61ACE9DC6497237AB673
SRR935361 VIRAL RNA BLS026407_d12-2 852 2 4285725324 21216462 202 3179 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-8/SRR935361/SRR935361.4 SRX322979 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415870 SAMN02044696 simple 408170 human gut metagenome no UPENNBL SRA073215 public BBF35AB23E1FD94B35DC78ADE1CF5CFE 882117959B642BB03C89D8186E1563EF
SRR935348 VIRAL RNA BLS020824_d13-1 853 1 2717001404 13450502 202 2071 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935348/SRR935348.3 SRX322980 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415871 SAMN02044697 simple 408170 human gut metagenome no UPENNBL SRA073215 public 3C2D60D1FCFCE5CC8D3CB16D6A80416E 00C66696B78876FDC4955ECA9EF39A8C
SRR935349 VIRAL RNA BLS020825_d13-2 853 2 3996836438 19786319 202 3046 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935349/SRR935349.3 SRX322981 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415872 SAMN02044698 simple 408170 human gut metagenome no UPENNBL SRA073215 public 70314A428DDBCC993C9199CD1E6E369E 0459C98D3B7A25569A632073F30BD448
SRR935350 VIRAL RNA BLS020826_d14-1 854 1 4605744430 22800715 202 3497 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935350/SRR935350.3 SRX322982 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415873 SAMN02044699 simple 408170 human gut metagenome no UPENNBL SRA073215 public 2D4613770F75F9165A54E9F1AA2407DB AC17CBB5E855917C42C241623F99F757
SRR935351 VIRAL RNA BLS020827_d15-1 855 1 3591010964 17777282 202 2753 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935351/SRR935351.3 SRX322983 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415874 SAMN02044700 simple 408170 human gut metagenome no UPENNBL SRA073215 public 88F8C6EE868EEE34F2F9BCBC4EF861FC E8268AA85000F3BFC00186A988018847
SRR935352 VIRAL RNA BLS020828_d21-1 879 1 2787336592 13798696 202 2129 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-8/SRR935352/SRR935352.3 SRX322984 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415875 SAMN02044701 simple 408170 human gut metagenome no UPENNBL SRA073215 public 6F246A2EFCC9CEEE2396BDC6F4771D39 78194F06640C1909574A91AA46EF79D8
SRR935354 VIRAL RNA BLS020829_d21-2 879 2 2745304230 13590615 202 2092 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935354/SRR935354.3 SRX322985 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415876 SAMN02044702 simple 408170 human gut metagenome no UPENNBL SRA073215 public 3207DFB66D812921F647904B8844200E DAB937C94D84A99ED6420DD9C603348E
SRR935356 VIRAL RNA BLS020830_d22-1 880 1 3493423956 17294178 202 2673 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935356/SRR935356.3 SRX323008 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415877 SAMN02044703 simple 408170 human gut metagenome no UPENNBL SRA073215 public 4288FD2C37BBC97BBACD82D122641973 54EF34C220BE0462E99B972DD8F862BA
SRR935363 VIRAL RNA BLS020831_d22-2 880 2 3215929284 15920442 202 2441 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935363/SRR935363.3 SRX323009 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415878 SAMN02044704 simple 408170 human gut metagenome no UPENNBL SRA073215 public C212502509E9A250F349657C9FE75003 311A9E8CC58DF338E366F8F2CE1B0C04
SRR935357 VIRAL RNA BLS020832_d23-1 881 1 4604072678 22792439 202 3516 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935357/SRR935357.3 SRX323011 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415879 SAMN02044705 simple 408170 human gut metagenome no UPENNBL SRA073215 public BDBAD72EB0309D7F7BF413042A24045F DC4351A47E8BA190F0400BBC1AEAD0FE
SRR935358 VIRAL RNA BLS020833_d23-2 881 2 5258500360 26032180 202 3973 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935358/SRR935358.3 SRX323013 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415880 SAMN02044706 simple 408170 human gut metagenome no UPENNBL SRA073215 public A8E8542429F4D6D9D75219054270B0A7 84CA9AB71131F293AE6B4115CF0C1578
SRR935359 VIRAL RNA BLS020834_d24-1 882 1 4475455440 22155720 202 3398 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935359/SRR935359.3 SRX323014 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415881 SAMN02044707 simple 408170 human gut metagenome no UPENNBL SRA073215 public 2956D0EF9C392D44E1259205B94684B9 32331A7D34329AFD7886105176FE2E69
SRR935360 VIRAL RNA BLS020835_d25-1 883 1 5934508914 29378757 202 4495 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-12/SRR935360/SRR935360.3 SRX323015 WGS RANDOM PCR PAIRED 0 0 ILLUMINA Illumina HiSeq 2000 SRP021107 PRJNA196801 196801 SRS415882 SAMN02044708 simple 408170 human gut metagenome no UPENNBL SRA073215 public 09508A278292880EBBF7443D41CAD49A 9AFDCF8F37E79600521C1AE0EAD201B9

0 comments on commit ec726ce

Please sign in to comment.