Pull in somacore rc4. (#1048)

Things this gives us:

- "kind" as child collection type parameter
- explicit dataframe sizing in the base spec
- more accurate types
- doc updates (maturity tags)

.pre-commit-config.yaml

@@ -15,7 +15,7 @@ repos:
     - id: mypy
       additional_dependencies:
         - "pandas-stubs==1.5.3.230214"
-        - "somacore==1.0.0rc3"
+        - "somacore==1.0.0rc4"
         - "types-setuptools==67.4.0.3"
       args: ["--config-file=apis/python/pyproject.toml", "apis/python/src", "apis/python/devtools"]
       pass_filenames: false

apis/python/setup.py

@@ -203,7 +203,7 @@ def run(self):
         "pyarrow>=9.0.0",
         "scanpy>=1.9.2",
         "scipy",
-        "somacore==1.0.0rc3",
+        "somacore==1.0.0rc4",
         "tiledb==0.20.*",
         "typing-extensions",  # Note "-" even though `import typing_extensions`
     ],

apis/python/src/tiledbsoma/_dense_nd_array.py

@@ -63,7 +63,7 @@ class DenseNDArray(NDArray, somacore.DenseNDArray):
 
     def read(
         self,
-        coords: options.DenseNDCoords = (),  # type: ignore[type-arg]
+        coords: options.DenseNDCoords = (),
         *,
         result_order: options.ResultOrderStr = somacore.ResultOrder.ROW_MAJOR,
         partitions: Optional[options.ReadPartitions] = None,
@@ -120,7 +120,7 @@ def read(
 
     def write(
         self,
-        coords: options.DenseNDCoords,  # type: ignore[type-arg]
+        coords: options.DenseNDCoords,
         values: pa.Tensor,
         *,
         platform_config: Optional[options.PlatformConfig] = None,

apis/python/src/tiledbsoma/_util.py

@@ -147,7 +147,7 @@ def slice_to_numeric_range(
 
 
 def dense_indices_to_shape(
-    coords: options.DenseNDCoords,  # type: ignore[type-arg]
+    coords: options.DenseNDCoords,
     array_shape: Tuple[int, ...],
     result_order: somacore.ResultOrder,
 ) -> Tuple[int, ...]: