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K fold#63

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luciancahil wants to merge 50 commits intosnap-stanford:mastersnap-stanford/GraphGym:masterfrom luciancahil:k-Foldluciancahil/GraphGym:k-FoldCopy head branch name to clipboard

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Commits

Commits on Mar 30, 2023

• modified gitignore

  

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  committed
  607ee14

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• added custom loader class

  

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  65a4ecb

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• allowed custom_loader to read zip location

  

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• added instructions for custom dataset to readme

  

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  committed
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Commits on Apr 8, 2023

• added custom dataset class file

  

  luciancahil

  committed
  4702f08

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• fixed file upload bug

  

  luciancahil

  committed
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• renamed custom dataset, fixed error in if statement

  

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  committed
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Commits on Apr 9, 2023

• removed print statement|

  

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  committed
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Commits on Apr 13, 2023

• fixed proces

  

  luciancahil

  committed
  a9594b0

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• updated readme to explain processing requirements

  

  luciancahil

  committed
  7fc5c07

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• added one final clarrifiaction to readme

  

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  committed
  69b61ef

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• bug fixes. Graphgym now able to easily accept custom datasets

  

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  committed
  96c4274

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• fixed readme

  

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  committed
  02f6c93

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Commits on May 1, 2023

• Merge pull request #1 from luciancahil/custom_dataset

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• added eggs

  

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  committed
  af43640

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• Merge pull request #2 from luciancahil/custom_dataset

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• added Visualization class

  

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  committed
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Commits on May 4, 2023

• visualizing final graph

  

  luciancahil

  committed
  1bb4bc7

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• reading nodeNames

  

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  committed
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• added string labels onto nodes

  

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• controlling color of nodes

  

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  committed
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Commits on May 8, 2023

• get the weights of the first GCN layer

  

  luciancahil

  committed
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• get the weights of the first linear layer

  

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  committed
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Commits on May 29, 2023

• Created Node visualization capabilities

  

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  committed
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Commits on May 31, 2023

• Added Learnable Edge Weights

  

  luciancahil

  committed
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Commits on Jun 1, 2023

• Added Edge Visualization

  

  luciancahil

  committed
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Commits on Jun 12, 2023

• Fixed Glitch in generating edges

  

  luciancahil

  committed
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Commits on Jun 13, 2023

• Added digraph support for visualization.

  

  luciancahil

  committed
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Commits on Jun 17, 2023

• Added ability to get pooled last hidden layer

  

  luciancahil

  committed
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• Add visualize_tsne function

  

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Commits on Jul 13, 2023

• Changed Visualization to Threshold

  

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  committed
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Commits on Jul 14, 2023

• Added correlation visualization

  

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  committed
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Commits on Jul 17, 2023

• Removed Checkpoint files when done

  

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  committed
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• Remove Checkpoint

  

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  committed
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Commits on Jul 26, 2023

• Added all data tuple

  

  luciancahil

  committed
  e4ea028

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• Merge pull request #3 from luciancahil/visualizations

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  b508b9f

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• Updated Readme

  

  luciancahil

  committed
  aa8a2ce

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• Made Y in All_data a tensor

  

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  committed
  eba2e59

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• remove shuffling

  

  luciancahil

  committed
  2b7a59b

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• Added k fold

  

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  committed
  328ba04

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• Calculate results

  

  luciancahil

  committed
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Commits on Aug 22, 2023

• I don't know man.

  

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  committed
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Commits on Nov 9, 2023

• Cleaned up garbage.

  

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  committed
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Commits on Nov 10, 2023

• Add Patient Processing Ability

  

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  committed
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• Processing cyto data

  

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  committed
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• Add gene and tissue processing

  

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  committed
  1d15f86

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• Added ability to generate single sh

  

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  committed
  ceab48b

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• Added custom.sh script

  

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  committed
  3933fdf

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• Added Parallel Ability

  

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  26b0b69

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• FInished

  

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