Merge pull request #172 from steppi/gene_grounding_curation

Gene grounding curation

entities.csv

@@ -9,18 +9,21 @@ Acetyl_CoA_synthetase
 ACOX
 ACSL
 Actin
+Actin_related_proteins
 Activin
 Activin_A
 Activin_AB
 Activin_B
 ACTN
+ADA
 Adaptor_protein
 Adaptor_protein_I
 Adaptor_protein_II
 Adaptor_protein_III
 Adaptor_protein_IV
 Adaptor_protein_V
 ADCY
+Adenosine_deaminase_family
 ADH
 ADORA
 ADRA
@@ -79,6 +82,7 @@ BCKDC
 BDKR
 BEST
 Beta_3_4_GTF
+Beta_HEX
 BIRC
 BLVR
 BMP
@@ -197,6 +201,7 @@ DGK
 DNA_polymerase_alpha
 DNA_polymerase_delta
 DNM
+DNMT
 DRD
 DUSP
 DVL
@@ -208,6 +213,10 @@ E2F
 E3_Ub_ligase
 EDN
 EDNR
+EEF
+EEF1
+EEF1A
+EEF1B
 EFN
 EGFR_ligand
 EGR
@@ -238,6 +247,7 @@ ETNK
 ETS
 EXOC
 EXT
+FABP
 F_actin
 FANC
 FERMT
@@ -335,6 +345,7 @@ HDL
 Hedgehog
 Hemoglobin
 HES
+HEX
 HIF
 HIF1
 HIF_alpha
@@ -397,6 +408,7 @@ KCNT
 Kinesin
 Kinetochore
 KLK
+KMT
 KSR
 Laminin_111
 Laminin_332
@@ -412,16 +424,21 @@ MAC
 MAC_1
 Macrophage_inflammatory_proteins
 MAF
+Microtubule_associated_proteins
+MAP1
 MAP1LC3
+MAP2
 MAP2K
 MAP3K
 MAPK
+MAPRE
 MCM
 Mechanosensitive_ion_channels
 MED
 MEF2
 MEK
 Metallothionein
+Methyltransferases
 MGAT
 MINDY
 MIRLET7
@@ -437,6 +454,7 @@ MRC
 MRN_complex
 MRPL
 MRPS
+MTNR
 mTORC1
 mTORC2
 MYH
@@ -518,6 +536,7 @@ PARP
 PARV
 Patched
 PBX
+PCSK
 PDE
 PDE1
 PDE3
@@ -559,6 +578,7 @@ PLCB
 PLCD
 PLCG
 PLD
+PLOD
 Pocket_protein
 Porins
 Potassium_calcium_activated_channels
@@ -582,6 +602,7 @@ PRDX
 PRKAC
 PRKAR
 PRKG
+PRMT
 Propionyl_CoA_carboxylase
 Protease
 Proteasome
@@ -627,6 +648,7 @@ S100A
 S1PR
 SAA
 Sarcoglycan_complex
+SCAR
 SCD
 SCN
 SCNN
@@ -653,6 +675,7 @@ Sodium_channels
 Sodium_voltage_gated_channel_alpha_subunits
 Sodium_voltage_gated_channel_beta_subunits
 SOS
+SP
 SPHK
 SPRED
 SPRY
@@ -675,6 +698,7 @@ TFAP2
 TFDP
 TGFB
 TGFBR
+TGM
 THBS
 THR
 Thrombin_antithrombin
@@ -689,6 +713,7 @@ TOP
 TOP2
 TPCN
 TRAF
+TRMT
 Troponin
 Troponin_C
 Troponin_I

equivalences.csv

@@ -468,6 +468,7 @@ HGNC_GROUP,186,CATSPER
 HGNC_GROUP,187,HRH
 HGNC_GROUP,198,FPR
 HGNC_GROUP,214,P2RX
+HGNC_GROUP,220,MTNR
 HGNC_GROUP,221,AGTR
 HGNC_GROUP,223,BDKR
 HGNC_GROUP,247,TPCN
@@ -498,10 +499,12 @@ HGNC_GROUP,314,GJ
 HGNC_GROUP,366,USP
 HGNC_GROUP,470,Cathepsin
 HGNC_GROUP,480,CLK
+HGNC_GROUP,487,KMT
 HGNC_GROUP,536,Axonemal_dynein
 HGNC_GROUP,537,Dynein
 HGNC_GROUP,538,Cytoplasmic_dynein
 HGNC_GROUP,546,EFN
+HGNC_GROUP,550,FABP
 HGNC_GROUP,561,FERMT
 HGNC_GROUP,563,GABR
 HGNC_GROUP,581,Augmin
@@ -514,12 +517,16 @@ HGNC_GROUP,643,COX
 HGNC_GROUP,644,ETC_complex_V
 HGNC_GROUP,647,MOB
 HGNC_GROUP,669,OTU
+HGNC_GROUP,691,PRMT
+HGNC_GROUP,755,SP
+HGNC_GROUP,773,TGM
 HGNC_GROUP,854,Neuropeptide_receptor
 HGNC_GROUP,856,KCNT
 HGNC_GROUP,862,CYP
 HGNC_GROUP,865,ANO
 HGNC_GROUP,866,BEST
 HGNC_GROUP,868,GLRA_GLRB
+HGNC_GROUP,973,PCSK
 HGNC_GROUP,996,Deubiquitinase
 HGNC_GROUP,997,MJD
 HGNC_GROUP,998,UCHL
@@ -547,16 +554,22 @@ HGNC_GROUP,1201,GRIN
 HGNC_GROUP,1202,GRID
 HGNC_GROUP,1203,Sodium_voltage_gated_channel_alpha_subunits
 HGNC_GROUP,1204,Sodium_voltage_gated_channel_beta_subunits
+HGNC_GROUP,1253,SCAR
 HGNC_GROUP,1298,CLEC
+HGNC_GROUP,1302,Adenosine_deaminase_family
+HGNC_GROUP,1303,ADA
 HGNC_GROUP,1344,MRN_complex
 HGNC_GROUP,1375,BRISC_complex
 HGNC_GROUP,1376,MINDY
+HGNC_GROUP,1436,Actin_related_proteins
 HGNC_GROUP,1511,CACNG
 HGNC_GROUP,1512,CACNA1
 HGNC_GROUP,1514,CACNA2D
 HGNC_GROUP,1515,CACNB
+HGNC_GROUP,1580,TRMT
 HGNC_GROUP,1582,Neurexins
 HGNC_GROUP,1598,IFITM
+HGNC_GROUP,1642,HEX
 HGNC_GROUP,1670,Adaptor_protein
 HGNC_GROUP,1671,Adaptor_protein_I
 HGNC_GROUP,1672,Adaptor_protein_II
@@ -565,9 +578,12 @@ HGNC_GROUP,1674,Adaptor_protein_IV
 HGNC_GROUP,1675,Adaptor_protein_V
 HGNC_GROUP,1697,MIRLET7
 HGNC_GROUP,1699,Deoxyribonucleoside_kinases
+HGNC_GROUP,1826,MAPRE
+HGNC_GROUP,1884,DNMT
 HGNC_GROUP,1901,TAC
 HGNC_GROUP,1902,Neuropeptides
 HGNC_GROUP,1908,EDN
+HGNC_GROUP,2023,PLOD
 HGNC_GROUP,2028,DYNC1
 HGNC_GROUP,2029,DYNC2
 HGNC_GROUP,2031,Axonemal_dynein_ODA
@@ -1033,6 +1049,7 @@ MESH,D006063,hCG
 MESH,D006162,GUCY
 MESH,D006419,HMOX
 MESH,D006454,Hemoglobin
+MESH,D006596,HEX
 MESH,D006655,HDAC
 MESH,D006657,Histone
 MESH,D006684,HLA_DR
@@ -1044,6 +1061,8 @@ MESH,D007986,LH
 MESH,D007987,GNRH
 MESH,D008075,HDL
 MESH,D008668,Metallothionein
+MESH,D008780,Methyltransferases
+MESH,D008869,Microtubule_associated_proteins
 MESH,D009218,Myosin_complex
 MESH,D009245,NADH_dehydrogenase
 MESH,D009418,S100
@@ -1074,6 +1093,7 @@ MESH,D011985,HTR
 MESH,D011988,THR
 MESH,D012318,RNApo_I
 MESH,D012319,RNApo_II
+MESH,D012359,TRMT
 MESH,D012799,GTF_family_29
 MESH,D013482,SOD
 MESH,D013879,TXN