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suongwong · Apr 12, 2024 · 207a024 · 207a024
1 parent 81dc692
commit 207a024
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/benj/integration.py b/benj/integration.py
@@ -172,8 +172,8 @@ def integrate_rna(adata, output=None, batch=None, hvg:int=0, use_combat:bool=Fal
         print("Data looks normalized already")
     adata.raw = adata
     if compute_umap:
-    	if hvg > 0:
-        	with sw("Calculating %d HVG" % hvg):
+        if hvg > 0:
+                with sw("Calculating %d HVG" % hvg):
                     sc.pp.highly_variable_genes(adata, n_top_genes=hvg, batch_key=batch, subset=True)
         if batch is not None and use_combat:
             with sw("Running ComBat"):