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add nanobound coupling kernel & build
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Marmaduke Woodman
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Sep 3, 2024
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| Original file line number | Diff line number | Diff line change |
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| name: build & test kernel library | ||
| on: [push] | ||
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| jobs: | ||
| pip-tvbk: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| fail-fast: true | ||
| matrix: | ||
| python-version: [ "3.10", ] | ||
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| steps: | ||
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| - uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 | ||
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| - name: set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v4 | ||
| id: setPy | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
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| - name: install tools and dependencies | ||
| run: python3 -m pip install -U setuptools pip wheel pytest scipy | ||
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| - name: build | ||
| run: cd tvb_kernels; pip install . | ||
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| - name: test | ||
| run: cd tvb_kernels; python -m pytest | ||
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| spack-tvbk: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
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| - uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 | ||
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| - name: setup spack | ||
| uses: spack/setup-spack@v2 | ||
| with: | ||
| ref: develop | ||
| buildcache: true | ||
| color: true | ||
| path: spack | ||
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| - name: install deps w/ spack | ||
| shell: spack-bash {0} | ||
| run: | | ||
| cd tvb_kernels | ||
| spack -e . concretize | ||
| spack -e . install | ||
| spack env activate . | ||
| spack env status | ||
| pip install pytest | ||
| - name: build nanobound library | ||
| shell: spack-bash {0} | ||
| run: | | ||
| cd tvb_kernels | ||
| spack env activate . | ||
| pip install . | ||
| pytest | ||
| # https://github.com/spack/setup-spack?tab=readme-ov-file#example-caching-your-own-binaries-for-public-repositories | ||
| - name: Push packages and update index | ||
| run: | | ||
| cd tvb_kernels | ||
| spack -e . mirror set --push --oci-username ${{ github.actor }} --oci-password "${{ secrets.GITHUB_TOKEN }}" local-buildcache | ||
| spack -e . buildcache push --base-image ubuntu:22.04 --update-index local-buildcache | ||
| if: ${{ !cancelled() }} |
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| Original file line number | Diff line number | Diff line change |
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| .cache | ||
| build | ||
| *.jpg | ||
| build | ||
| .spack-env | ||
| spack.lock | ||
| *.whl |
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| cmake_minimum_required(VERSION 3.18...3.27) | ||
| project(tvb_kernels LANGUAGES C CXX) | ||
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| if (NOT SKBUILD) | ||
| message(WARNING "\ | ||
| This CMake file is meant to be executed using 'scikit-build-core'. | ||
| Running it directly will almost certainly not produce the desired | ||
| result. If you are a user trying to install this package, use the | ||
| command below, which will install all necessary build dependencies, | ||
| compile the package in an isolated environment, and then install it. | ||
| ===================================================================== | ||
| $ pip install . | ||
| ===================================================================== | ||
| If you are a software developer, and this is your own package, then | ||
| it is usually much more efficient to install the build dependencies | ||
| in your environment once and use the following command that avoids | ||
| a costly creation of a new virtual environment at every compilation: | ||
| ===================================================================== | ||
| $ pip install nanobind scikit-build-core[pyproject] | ||
| $ pip install --no-build-isolation -ve . | ||
| ===================================================================== | ||
| You may optionally add -Ceditable.rebuild=true to auto-rebuild when | ||
| the package is imported. Otherwise, you need to rerun the above | ||
| after editing C++ files.") | ||
| endif() | ||
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| set(CMAKE_EXPORT_COMPILE_COMMANDS ON) | ||
| add_compile_options(-std=c++17 -fopenmp-simd -mavx2 -march=native -mtune=native) | ||
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| find_package(Python 3.8 | ||
| REQUIRED COMPONENTS Interpreter Development.Module | ||
| ) | ||
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| if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES) | ||
| set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build." FORCE) | ||
| set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo") | ||
| endif() | ||
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| # Detect the installed nanobind package and import it into CMake | ||
| execute_process( | ||
| COMMAND "${Python_EXECUTABLE}" -m nanobind --cmake_dir | ||
| OUTPUT_STRIP_TRAILING_WHITESPACE OUTPUT_VARIABLE NB_DIR) | ||
| list(APPEND CMAKE_PREFIX_PATH "${NB_DIR}") | ||
| find_package(nanobind CONFIG REQUIRED) | ||
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| nanobind_add_module(tvb_kernels tvb_kernels.cpp tvbk_conn.c) | ||
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| nanobind_add_stub( | ||
| tvb_kernels_stub | ||
| MODULE tvb_kernels | ||
| OUTPUT tvb_kernels.pyi | ||
| PYTHON_PATH $<TARGET_FILE_DIR:tvb_kernels> | ||
| DEPENDS tvb_kernels | ||
| MARKER_FILE py.typed | ||
| ) | ||
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| install(TARGETS tvb_kernels LIBRARY DESTINATION tvb_kernels) |
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