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[TVB-1999] Integrate Zenodo API #691

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abhi-glitchhg wants to merge 106 commits intomasterthe-virtual-brain/tvb-root:masterfrom TVB-1999-deothe-virtual-brain/tvb-root:TVB-1999-deoCopy head branch name to clipboard

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Commits on May 12, 2023

• Using pyzenodo3 as a client to connect with Zenodo.

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• remove the swp file from git, add .swp extension in gitignore

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Commits on Jun 6, 2023

• remove the search related methods from zenodo class, currently we will just focus on the downloading functionality. If required searching functionalities can be added

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Commits on Jun 7, 2023

• add method get_latest_version to fetch the latest version of the Record

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Commits on Jun 11, 2023

• add pooch as a dependancy

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Commits on Jun 12, 2023

• add tvb class and tests

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• minor nits and fixes

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Commits on Jun 16, 2023

• added todo in fetch_data method

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• Update tvb_library/tvb/datasets/tvb_data.py

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• fixed the absolute path error

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Commits on Jun 17, 2023

• added header

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• added header

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• added DATASETS_FOLDER attribute to config settings.

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• some improvements in tests, now from_cls method of connectivity loads data using new method

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• Merge branch 'pyzenodo' of https://github.com/abhi-glitchhg/tvb-root into pyzenodo

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• fix typos

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Commits on Jun 20, 2023

• extract dir parameter when instantiating the class.

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Commits on Jun 23, 2023

• change download_dir to .cache/tvb from .cache/pooch

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Commits on Jun 29, 2023

• .

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• Merge pull request #675 from abhi-glitchhg/pyzenodo

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Commits on Jun 30, 2023

• fixed the file not found errors with remaining datatypes'

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• add types

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• Merge pull request #676 from abhi-glitchhg/pyzenodo

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Commits on Jul 6, 2023

• removed the data setup from build.yml, fix the errors found in tests

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• Merge pull request #677 from abhi-glitchhg/pyzenodo

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Commits on Jul 8, 2023

• replacing tvb_data package from code.

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• Merge branch 'TVB-1999-deo' into pyzenodo

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• Merge pull request #678 from abhi-glitchhg/pyzenodo

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• fix tvb_data not found error and one identation error

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• Merge branch 'pyzenodo' of https://github.com/abhi-glitchhg/tvb-root into pyzenodo

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• Merge pull request #679 from abhi-glitchhg/pyzenodo

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• fix the identation

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  38b8fab

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• Merge pull request #680 from abhi-glitchhg/pyzenodo

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• fix the data loading issues that i missed earlier.

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  committed
  4c9a0bb

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• some more fixes..

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• Merge pull request #681 from abhi-glitchhg/pyzenodo

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Commits on Jul 11, 2023

• fix typo

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Commits on Jul 12, 2023

• removed the commented lines, removed the tvb_data

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• fix test; reuse tvbzenododataset instance

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• Merge pull request #683 from abhi-glitchhg/pyzenodo

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Commits on Jul 16, 2023

• fix the notebooks

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• fixed the notebooks

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• trigger for prs as well

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Commits on Jul 22, 2023

• fix build_step1.py, added ability to unzip whole data.

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• revert back to original notebooks metadata

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• Merge pull request #685 from abhi-glitchhg/pyzenodo

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• add missing : to the github workflow files.

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• Merge pull request #686 from abhi-glitchhg/pyzenodo

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• fixed the silly indentation mistakes in the github actions files.

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Commits on Jul 23, 2023

• fix the directory path in the tests

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Commits on Jul 26, 2023

• Using pyzenodo3 as a client to connect with Zenodo.

  abhi-glitchhg

  committed
  f420d75

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• remove the swp file from git, add .swp extension in gitignore

  abhi-glitchhg

  committed
  e7c0eb1

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• remove the search related methods from zenodo class, currently we will just focus on the downloading functionality. If required searching functionalities can be added

  abhi-glitchhg

  committed
  594be2a

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• add method get_latest_version to fetch the latest version of the Record

  abhi-glitchhg

  committed
  906bf03

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• add pooch as a dependancy

  abhi-glitchhg

  committed
  34440b7

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• add tvb class and tests

  abhi-glitchhg

  committed
  7a2fcee

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• minor nits and fixes

  abhi-glitchhg

  committed
  cbeb92b

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• added todo in fetch_data method

  abhi-glitchhg

  committed
  b675f92

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• fixed the absolute path error

  abhi-glitchhg

  committed
  7c82487

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• added header

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  committed
  7e78f97

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• added header

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• added DATASETS_FOLDER attribute to config settings.

  abhi-glitchhg

  committed
  16eef16

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• some improvements in tests, now from_cls method of connectivity loads data using new method

  abhi-glitchhg

  committed
  696b599

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• Update tvb_library/tvb/datasets/tvb_data.py

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  committed
  7cbc3f6

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• fix typos

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  c454341

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• extract dir parameter when instantiating the class.

  abhi-glitchhg

  committed
  ce408d4

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• change download_dir to .cache/tvb from .cache/pooch

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  committed
  3bdf9db

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• .

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  committed
  64c2d08

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• fixed the file not found errors with remaining datatypes'

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  committed
  15550d2

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• add types

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  committed
  d6c2c76

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• removed the data setup from build.yml, fix the errors found in tests

  abhi-glitchhg

  committed
  b3d3d63

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• replacing tvb_data package from code.

  abhi-glitchhg

  committed
  b51a7a1

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• fix tvb_data not found error and one identation error

  abhi-glitchhg

  committed
  c3f5947

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• fix the identation

  abhi-glitchhg

  committed
  f45c69b

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• fix the data loading issues that i missed earlier.

  abhi-glitchhg

  committed
  24a21a6

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• some more fixes..

  abhi-glitchhg

  committed
  2105be4

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• fix typo

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  committed
  c4869fc

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• removed the commented lines, removed the tvb_data

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  230f88f

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• fix test; reuse tvbzenododataset instance

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  committed
  c410999

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• fix the notebooks

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  committed
  50e8125

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• fixed the notebooks

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  committed
  f19b1ad

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• trigger for prs as well

  abhi-glitchhg

  committed
  cc5062b

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• fix build_step1.py, added ability to unzip whole data.

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  committed
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• revert back to original notebooks metadata

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• add missing : to the github workflow files.

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• fixed the silly indentation mistakes in the github actions files.

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  committed
  7c328f9

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• fix the directory path in the tests

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Commits on Jul 28, 2023

• add line which was removed accidentally while resolving the conflict

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• resolve the conflicts

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• typo fix

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Commits on Jul 31, 2023

• api change and fix typo

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Commits on Aug 6, 2023

• getting missing whitespace around operator error

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• revert the change

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• fix the pycodestyle issue

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• Merge branch 'master' into pyzenodo

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• Merge pull request #687 from abhi-glitchhg/pyzenodo

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Commits on Aug 21, 2023

• minor changes

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• Merge branch 'pyzenodo' of https://github.com/abhi-glitchhg/tvb-root into pyzenodo

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Commits on Aug 22, 2023

• fix test fix

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Commits on Aug 23, 2023

• Merge branch 'the-virtual-brain:master' into pyzenodo

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• Merge branch 'the-virtual-brain:master' into pyzenodo

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• Merge pull request #690 from abhi-glitchhg/pyzenodo

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Commits on Aug 26, 2023

• update base.py

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• Merge branch 'pyzenodo' of https://github.com/abhi-glitchhg/tvb-root into pyzenodo

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• update base.py

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  dea53d3

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• Merge pull request #692 from abhi-glitchhg/pyzenodo

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