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Move segment attrs to lineage #2297

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jeromekelleher
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Depends on #2296

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codecov bot commented Jul 25, 2024

Codecov Report

Attention: Patch coverage is 92.24138% with 9 lines in your changes missing coverage. Please review.

Project coverage is 90.96%. Comparing base (89f8770) to head (be2644d).

Files Patch % Lines
lib/msprime.c 92.10% 6 Missing and 3 partials ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #2297      +/-   ##
==========================================
- Coverage   90.96%   90.96%   -0.01%     
==========================================
  Files          20       20              
  Lines       12003    12032      +29     
  Branches     2444     2449       +5     
==========================================
+ Hits        10919    10945      +26     
- Misses        598      600       +2     
- Partials      486      487       +1     
Flag Coverage Δ
C 90.96% <92.24%> (-0.01%) ⬇️
python 98.70% <ø> (ø)

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@jeromekelleher jeromekelleher force-pushed the move-segment-attrs-to-lineage branch 2 times, most recently from 542f634 to 7435ca9 Compare July 30, 2024 15:19
Update the class definitions

Remove unused hull argument msp_alloc_segment
Patch-up DTWF in python

Patch up sweep code in Python

Basic coalescent working in C

Other basic models passing in C

C code mostly working!

Fixup python algorithms code
Finish moving population to Lineage in Python

Get population on lineage working for C

FIXUP python algorithms code

fixup Pyhton c interface

Tidy Python
@jeromekelleher jeromekelleher force-pushed the move-segment-attrs-to-lineage branch from d5933c1 to be2644d Compare July 31, 2024 15:24
@jeromekelleher jeromekelleher marked this pull request as ready for review July 31, 2024 15:24
@jeromekelleher
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I'm going to merge this much as more progress on the refactoring for #2294.

@jeromekelleher jeromekelleher merged commit a24cf0f into tskit-dev:main Jul 31, 2024
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@jeromekelleher jeromekelleher deleted the move-segment-attrs-to-lineage branch July 31, 2024 15:53
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