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doc(qa) adding release notes for 2025.02 #8283

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9ca36db
adding gen3-release-notes.md as part of the release artifacts
PlanXCyborg Jan 21, 2025
e92d5f7
adding manifest.json as part of the release artifacts
PlanXCyborg Jan 21, 2025
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47 changes: 47 additions & 0 deletions releases/2025/02/gen3-release-notes.md
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# Core Gen3 Release 2025.02 (Chromite)
## uc-cdis/cloud-automation

#### Bug Fixes
- Fix mismatching parameter names in Single Table Migration Job ([#2657](https://github.com/uc-cdis/cloud-automation/pull/2657))

#### Improvements
- Make Single Table Migration Job a Priority Job so that the job doesn't get
killed if its running for a long time ([#2657](https://github.com/uc-cdis/cloud-automation/pull/2657))

## uc-cdis/data-portal

#### Improvements
- update expolrer config example in default config file ([#1660](https://github.com/uc-cdis/data-portal/pull/1660))

#### Dependency Updates
- update guppy to 0.20.1 ([#1662](https://github.com/uc-cdis/data-portal/pull/1662))

## uc-cdis/fence

#### Dependency Updates
- Bumps [werkzeug](https://github.com/pallets/werkzeug) from 3.0.4 to 3.0.6.
(#1192)

## uc-cdis/hatchery

#### Improvements
- Allow assume-role for cross-account access to pay model table ([#119](https://github.com/uc-cdis/hatchery/pull/119))
- Run a quick check before creating the subnet to make sure the instance type
for nextflow is available in that AZ. ([#111](https://github.com/uc-cdis/hatchery/pull/111))

## uc-cdis/indexd

#### Improvements
- Add + Fix Parameters for Single Table IndexD Migration ([#384](https://github.com/uc-cdis/indexd/pull/384))

## uc-cdis/sheepdog

#### Improvements
- Support client_credentials tokens ([#425](https://github.com/uc-cdis/sheepdog/pull/425))

## uc-cdis/tube

#### Dependency Updates
- Bumps [werkzeug](https://github.com/pallets/werkzeug) from 3.0.3 to 3.0.6.
(#289)

313 changes: 313 additions & 0 deletions releases/2025/02/manifest.json
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{
"notes": [
"This is the release manifest",
"That's all I have to say"
],
"jenkins": {
"autodeploy": "yes"
},
"versions": {
"arborist": "quay.io/cdis/arborist:2025.02",
"aws-es-proxy": "quay.io/cdis/aws-es-proxy:v1.3.1",
"fence": "quay.io/cdis/fence:2025.02",
"indexd": "quay.io/cdis/indexd:2025.02",
"peregrine": "quay.io/cdis/peregrine:2025.02",
"revproxy": "quay.io/cdis/nginx:2025.02",
"sheepdog": "quay.io/cdis/sheepdog:2025.02",
"portal": "quay.io/cdis/data-portal:2025.02",
"fluentd": "fluent/fluentd-kubernetes-daemonset:v1.2-debian-cloudwatch",
"spark": "quay.io/cdis/gen3-spark:2025.02",
"tube": "quay.io/cdis/tube:2025.02",
"guppy": "quay.io/cdis/guppy:2025.02",
"sower": "quay.io/cdis/sower:2025.02",
"hatchery": "quay.io/cdis/hatchery:2025.02",
"ambassador": "quay.io/datawire/ambassador:1.4.2",
"wts": "quay.io/cdis/workspace-token-service:2025.02",
"manifestservice": "quay.io/cdis/manifestservice:2025.02",
"ssjdispatcher": "quay.io/cdis/ssjdispatcher:2025.02"
},
"arborist": {
"deployment_version": "2"
},
"indexd": {
"arborist": "true"
},
"sower": [
{
"name": "pelican-export",
"action": "export",
"container": {
"name": "job-task",
"image": "quay.io/cdis/pelican-export:2025.02",
"pull_policy": "Always",
"env": [
{
"name": "DICTIONARY_URL",
"valueFrom": {
"configMapKeyRef": {
"name": "manifest-global",
"key": "dictionary_url"
}
}
},
{
"name": "GEN3_HOSTNAME",
"valueFrom": {
"configMapKeyRef": {
"name": "manifest-global",
"key": "hostname"
}
}
},
{
"name": "ROOT_NODE",
"value": "subject"
}
],
"volumeMounts": [
{
"name": "pelican-creds-volume",
"readOnly": true,
"mountPath": "/pelican-creds.json",
"subPath": "config.json"
},
{
"name": "peregrine-creds-volume",
"readOnly": true,
"mountPath": "/peregrine-creds.json",
"subPath": "creds.json"
}
],
"cpu-limit": "1",
"memory-limit": "4Gi"
},
"volumes": [
{
"name": "pelican-creds-volume",
"secret": {
"secretName": "pelicanservice-g3auto"
}
},
{
"name": "peregrine-creds-volume",
"secret": {
"secretName": "peregrine-creds"
}
}
],
"restart_policy": "Never"
}
],
"hatchery": {
"user-namespace": "jupyter-pods",
"sub-dir": "/lw-workspace",
"user-volume-size": "10Gi",
"sidecar": {
"cpu-limit": "0.8",
"memory-limit": "256Mi",
"image": "quay.io/cdis/gen3fuse-sidecar:2025.02",
"env": {
"NAMESPACE": "<environment>",
"HOSTNAME": "<environment_fqdn>"
},
"args": [

],
"command": [
"/bin/bash",
"/sidecarDockerrun.sh"
],
"lifecycle-pre-stop": [
"su",
"-c",
"echo test",
"-s",
"/bin/sh",
"root"
]
},
"containers": [
{
"target-port": 8888,
"cpu-limit": "0.8",
"memory-limit": "1.5Gi",
"name": "Brain - Python/R/Freesurfer",
"image": "quay.io/cdis/jupyterbrain:1.1",
"env": {

},
"args": [
"--NotebookApp.base_url=/lw-workspace/proxy/",
"--NotebookApp.password=''",
"--NotebookApp.token=''"
],
"command": [
"start-notebook.sh"
],
"path-rewrite": "/lw-workspace/proxy/",
"use-tls": "false",
"ready-probe": "/lw-workspace/proxy/",
"lifecycle-post-start": [
"/bin/sh",
"-c",
"export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true"
],
"user-uid": 1000,
"fs-gid": 100,
"user-volume-location": "/home/jovyan/pd"
},
{
"target-port": 8888,
"cpu-limit": "0.5",
"memory-limit": "256Mi",
"name": "Bioinfo - Python/R",
"image": "quay.io/occ_data/jupyternotebook:1.7.2",
"env": {

},
"args": [
"--NotebookApp.base_url=/lw-workspace/proxy/",
"--NotebookApp.password=''",
"--NotebookApp.token=''"
],
"command": [
"start-notebook.sh"
],
"path-rewrite": "/lw-workspace/proxy/",
"use-tls": "false",
"ready-probe": "/lw-workspace/proxy/",
"lifecycle-post-start": [
"/bin/sh",
"-c",
"export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true"
],
"user-uid": 1000,
"fs-gid": 100,
"user-volume-location": "/home/jovyan/pd"
},
{
"target-port": 8888,
"cpu-limit": "0.8",
"memory-limit": "1024Mi",
"name": "Bioinfo - Python/R",
"image": "quay.io/occ_data/jupyternotebook:1.7.2",
"env": {

},
"args": [
"--NotebookApp.base_url=/lw-workspace/proxy/",
"--NotebookApp.password=''",
"--NotebookApp.token=''"
],
"command": [
"start-notebook.sh"
],
"path-rewrite": "/lw-workspace/proxy/",
"use-tls": "false",
"ready-probe": "/lw-workspace/proxy/",
"lifecycle-post-start": [
"/bin/sh",
"-c",
"export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true"
],
"user-uid": 1000,
"fs-gid": 100,
"user-volume-location": "/home/jovyan/pd"
}
]
},
"global": {
"environment": "<environment>",
"hostname": "<environment_fqdn>",
"revproxy_arn": "<aws_acm_cert_arn",
"dictionary_url": "<Gen3 Dictionary>",
"portal_app": "gitops",
"kube_bucket": "kube-<environment>-gen3",
"logs_bucket": "logs-<environment>-gen3",
"sync_from_dbgap": "False",
"dispatcher_job_num": "5",
"useryaml_s3path": "<user yaml>",
"netpolicy": "on",
"tier_access_level": "regular",
"tier_access_limit": "50",
"public_datasets": true
},
"ssjdispatcher": {
"job_images": {
"indexing": "quay.io/cdis/indexs3client:2025.02"
}
},
"canary": {
"default": 0
},
"guppy": {
"indices": [
{
"index": "<environment_prefix>_etl",
"type": "case"
},
{
"index": "<environment_prefix>_file",
"type": "file"
}
],
"config_index": "<environment_prefix>_array-config",
"auth_filter_field": "auth_resource_path"
},
"scaling": {
"arborist": {
"strategy": "auto",
"min": 2,
"max": 4,
"targetCpu": 40
},
"portal": {
"strategy": "auto",
"min": 2,
"max": 4,
"targetCpu": 40
},
"fence": {
"strategy": "auto",
"min": 5,
"max": 15,
"targetCpu": 40
},
"indexd": {
"strategy": "auto",
"min": 2,
"max": 4,
"targetCpu": 40
},
"peregrine": {
"strategy": "auto",
"min": 2,
"max": 4,
"targetCpu": 40
},
"presigned-url-fence": {
"strategy": "auto",
"min": 15,
"max": 25,
"targetCpu": 40
},
"revproxy": {
"strategy": "auto",
"min": 2,
"max": 4,
"targetCpu": 40
},
"sheepdog": {
"strategy": "auto",
"min": 2,
"max": 4,
"targetCpu": 40
},
"guppy": {
"strategy": "auto",
"min": 2,
"max": 4,
"targetCpu": 40
}
}
}
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