3.3.2

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 3.3.1

Notes to tag/commit: 3.3.2

Generated: 2020-07-23

Improvements

• Add pre-commit hooks and baseline secrets. (#100)
• Update demo notebooks (#100)
• Region in IDPH-Hospital now doesn't have number in the start of the string
  (#97)

New Features

• DS4C have updated dataset, as per
  COV-400: remove old
  properties, update infected_by as list, drop non-numeric
  contact_number. (#94)

Bug Fixes

• Fix CTP ETL with new fields, as per
  COV-399: remove deprecated
  score and grade, ETL deathConfirmed into deaths. (#93)

Fix S3 sync for bayes-by-county images

Don't pass '--delete' flag in the S3 sync call to move bayes-by-county images to S3 - now the pod won't error at the end of the nb-etl job.

IL bayes model V2, virus ETL, NPI-PRO ETL

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 3.2.1

Notes to tag/commit: 3.3.0

Generated: 2020-07-10

New Features

• version 2 of the IL by-county bayes model; use google mobility data for
  real-time Rt estimates (#89)
• Code to add virus* node metadata. (#33)
• Add NPI-PRO ETL, this is one-time ETL, as the data haven't updated for a
  while (#86)

Bug Fixes

• Fixes IDPH Facility ETL: some of the facilities simultaneously have both
  "open" and "closed" statuses. This fixes it, this PR also requires extra
  status field in summary_location. (#85)

Dependency Updates

• vctrs 0.3.0 was deprecated, replace with 0.3.1 in the JHU map R notebook.
  (#87)

3.2.1: feat: Chicago Neighborhoods ETL (#84)

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 3.2.0

Notes to tag/commit: 9c0b6bd

Generated: 2020-06-29

New Features

• Add ETL for Chicago Neighborhoods dataset (#84)

Bug Fixes

• Fix mistake preventing jhu_country_codes ETL to run in QA (#83)

3.2.0

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 3.1.1

Notes to tag/commit: 3.2.0

Generated: 2020-06-26

New Features

• Update IDPH to grab additional demographics statistics for count/tested
  (age, gender, race based statistics) (#82)
• Run Illinois county modeling simulation (#76)

3.1.1

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 3.1.0

Notes to tag/commit: d9249fe

Generated: 2020-06-23

New Features

• Bullseye-based image for Python/R scripts (#79)
• Add ETL for IDPH Hospital dataset (#77)

3.1.0

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 3.0.1

Notes to tag/commit: 3.1.0

Generated: 2020-06-18

New Features

• Modeling R code and figures (#71)

Improvements

• Change folder structure to keep all notebooks in the same repo (#71)
• add proxy for pip install (#74)
• update readme (#74)
• remove show figure to mount notebook (#72)

Deployment Changes

• Use "covid19-nb-etl" instead of "nb-etl" Quay image (#71)

Boto version fix

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 3.0.0

Notes to tag/commit: 3.0.1

Generated: 2020-06-18

Improvements

• Update the version of boto3 (#70)
• Add proxy to pip install (#69)
• Whitelist census.gov and covidtracking.com (#69)

JHU to S3 breaking change: "<5" values

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 2.1.0

Notes to tag/commit: 3.0.0

Generated: 2020-06-16

New Features

• Covid Tracking Project have new fields available and updates (#67)

Improvements

• Refactoring IDPH ETL's to make it simpler (#66)
• JHU to S3: replace value by '<5' for values <5 (#68)
• Update the package installation part in the R notebook to be compatible
  with R version 3.6.0. Add several dependency packages. (#53)

2.1.0

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 2.0.0

Notes to tag/commit: 2.1.0

Generated: 2020-06-12

New Features

• Fix DSFSI: it will remove source field (#65)
• Add missing file to nb-etl Dockerfile (#64)
• Top10 scripts for homepage plots (#63)
• Add the ETL for IDPH Facility data (#62)
• Added ETL part for demographic variables for new DD (#61)
• ETL will grab the latest update (commit) datetime for CCMap files to have
  versioning of the data, in case it will change in the future (#60)
• Add normalization for state abbreviations to long names (#60)
• Add ETL for DSFSI dataset (#56)
• New ETL for OWID data (#55)
• Fix CTP (#59)

Deployment Changes

• Add crontab entry for idph_facility (#62)