5.31.0

Release Notes

For: uc-cdis/data-portal

Notes since tag: 5.30.1

Notes to tag/commit: 5.31.0

Generated: 2024-08-21

Bug Fixes

• Discovery: the location and padding for accessibility links are no longer
  hard coded (#1585)
• prevents Atlas Data Dictionary app from crashing when unProcessedChartData
  input to processNumericChartData function is null. (#1581)
• fix: use openid URL for Atlas to get automatic login behavior (#1581)

New Features

• add access-denied page and flag to enable when user does not have access to
  any site resources (#1581)
• Adds a dashboard to show the real time status of the user's workflow limit
  while using the Gen 3 GWAS App and Results App. (#1581)
• Adds error messages and prevents submission to GEN3 GWAS App job input
  modal when user has exceeded their allotted workflow limit, or if the
  service for checking their workflow limit doesn't respond or provides
  malformed data. (#1581)

Improvements

• Discovery: export to workspace will set button state first before exporting
  (#1577)
• Discovery: don't make call to manifest service if manifest is empty (#1577)

Improve WTS response handling

• Improve the way that portal handles the response from WTS

5.30.0

Release Notes

For: uc-cdis/data-portal

Notes since tag: 5.29.1

Notes to tag/commit: 5.30.0

Generated: 2024-08-01

New Features

• Updates the logic for setting study accesslevel variable to set studies
  that are flagged as unaccessible as unaccessible. (#1569)

Bug Fixes

• Fix an issue with the discovery page not loading when the "download
  manifest" or "export to workspace" buttons are not enabled (#1575)

Improvements

• Improves code organization by moving redirect functions for Discovery app
  to a Utils file: this updates the file locations and names for the react
  hook and function used to Handle Redirects following button clicks for
  Discovery Page action bar and discovery details action buttons. (#1567)

5.29.1

What's Changed

• Consider '*' as a wildcard by @nss10 in #1566
• upgrade fuse to latest version by @thanh-nguyen-dang in #1559

Full Changelog: 5.29.0...5.29.1

5.29.0

Release Notes

For: uc-cdis/data-portal

Notes since tag: 5.28.0

Notes to tag/commit: 5.29.0

Generated: 2024-07-01

Improvements

• Add support for hyperlinks in the study viewer detailed description. (#1565)
• Misc: added descriptions about fileCountField into docs (#1563)
• Discovery: re-org some data availability icons and states. Pending has
  been renamed to Waiting and has became the default state for metadata
  that doesn't have an authz value. Not Available now is a state that
  need to be explicitly set from a metadata field. (#1558)

Deployment Changes

• Discovery: The Pending state has been renamed to Waiting and has became
  the default state for metadata that doesn't have an authz value. If an
  env is using this state, it needs to update its portal config accordingly
  (#1558)

Bug Fixes

• Study reg: fixed a bug causing pre-defined data repository metadata got
  overwritten by user (#1560)

5.28.0

Release Notes

For: uc-cdis/data-portal

Notes since tag: 5.27.0

Notes to tag/commit: 5.28.0
Generated: 2024-06-21

New Features

• Update Team Projects Modal for use case where user does not have teams
  available (#1557)
• Add storybook page for new Modal (#1557)
• Updates the Discovery Action Bar so that filtered metadata is sent to the
  ${manifestServiceApiPath}/metadata after the user clicks the export
  to workspace button, pending that they have enabled
  discoveryConfig.features.exportToWorkspace.enableExportFullMetadata.
  The filtering removes any field that has been defined in
  discoveryConfig.features.exportToWorkspace.excludedMetadataFields, if
  that config field exists. Note that field names in
  discoveryConfig.features.exportToWorkspace.excludedMetadataFields can
  represent nested fields, for example study_metadata.username. (#1534)
• add html mark for accessibility (#1546)
• add NVM file to allow for using nvm command to run correct version of node
  and npm (#1542)
• update documentation (#1542)

Bug Fixes

• Fix explorer table header sorting issue (#1554)
• remove already selected covariates from list to eliminate ability to add
  multiple times (#1549)
• allow for valueSummary to be null without crashing application (#1546)

Improvements

• The DiscoveryActionBar component has been modularized into separate
  components, utils, constants and interfaces. (#1534)

5.27.0

Release Notes

For: uc-cdis/data-portal

Notes since tag: 5.26.1

Notes to tag/commit: 5.27.0

Generated: 2024-06-10

Improvements

• Updates deprecated "classic" endpoint for ClinicalTrials.gov and replaces
  it with new ClinicalTrials.gov API v2.0 (#1540)
• Adds debouncing for search input on VADC Atlas Data Dictionary application
  to improve UX when typing searches with large table data sizes (#1548)
• Updates column names and formats numbers with commas to improve readability
  (#1548)
• Update attrition table component to dynamically generate breakdown columns
  instead of relying on hardcoded value (#1548)
• Globally renames react state data to displayedData to improve
  code clarity. (#1548)

Deployment Changes

• Need to update to CEDAR wrapper 0.5.0
  https://github.com/uc-cdis/cedar-wrapper-service/releases/tag/0.5.0 for
  this feature (#1540)

New Features

• Adds a search bar message in VADC Data Dictionary that is revealed when the
  user searches for a result whose column is hidden on the current page due
  to their column management selection. This message includes a button that
  allows the user to reset their column management selections to display the
  hidden information. (#1548)

Bug Fixes

• Removes the delay that occurs when opening GWAS Results after switching
  teams, such as after Selecting team1, Open GWAS Results, wait 5s, Select
  team2, Open GWAS Results. Before you would see team1 results for first 5s
  or so (#1548)
• CheckSearchTermUtils updated to handle user searches including commas and
  percentages, fixes bug with zeros (before searching for zero did not work
  correctly nor highlight). Added new function formatForSearchComparison to
  support this. (#1548)
• Adds spinner until studies are available, preventing user from entering
  information before form is ready for it (#1540)

5.26.1

Release Notes

For: uc-cdis/data-portal

Notes since tag: 5.26.0

Notes to tag/commit: 5.26.1

Generated: 2024-06-04

Bug Fixes

• Discovery: fixed a bug that button incorrectly disabled because of
  duplicated required IDP tags (#1545)

Improvements

• Discovery: use file manifest instead of study IDs for direct download
  (#1545)

5.26.0

Release Notes

For: uc-cdis/data-portal

Notes since tag: 5.25.0

Notes to tag/commit: 5.26.0

Generated: 2024-06-03

Bug Fixes

• Discovery: fix another bug cause the page to crash due to incorrectly
  handling optional tags field (#1544)
• Discovery: fixed a bug causing the page to crash due to inappropriately
  handling optional tags field (#1543)

New Features

• Updates VADC Atlas Data Dictionary app so that columns are sorted based on
  their data type, making it easier for users to find the desired row data.
  (#1530)
• Updates Atlas Data Dictionary application to use API endpoint instead of
  test data (#1525)
• AtlasDataDictionaryContainer now wraps application in protected content
  component to ensure users are logged in before accessing application (#1525)
• Adds rules for Data Dictionary Name form field to enforce valid file names
  (#1524)
• Improves form usability by updating registration form with new messages
  including an email link (#1515)

Improvements

• Remove the nginx routing regex pattern specific to file extensions, so it
  won't match for project IDs that contain a "." (#1538)
• Updates VADC Atlas Data Dictionary numeric charts to use ticks with an
  interval of 1 (every other tick is shown) and to use rounded and slanted
  ticks. Formats data displayed in tool tips. (#1530)
• Adds spacing to Concept ID columns to improve readability (#1525)

Dependency Updates

• Bumps ejs from 3.1.9 to 3.1.10. (#1528)
• Bumps
  follow-redirects
  from 1.15.5 to 1.15.6. (#1522)
• Bumps express from 4.18.2 to
  4.19.2. (#1510)
• Bumps @adobe/css-tools from 4.2.0 to
  4.3.2. (#1461)
• Bumps
  follow-redirects
  from 1.15.2 to 1.15.5. (#1482)

5.25.0

Release Notes

For: uc-cdis/data-portal

Notes since tag: 5.24.0

Notes to tag/commit: 5.25.0

Generated: 2024-04-15

New Features

• Add username column to results table (#1519)
• Adds column management to VADC Atlas Data Dictionary (#1518)
• Retrieve covariates by concept type (#1518)

Improvements

• Styles the global banner on data portal (#1518)
• Globally updates all instances of the variable nr_persons to personCount to
  improve code maintainability, clarity and communication (#1518)
• more consistent naming between quantitative and case-control gwas modules
  (#1518)
• Adds unit test to ensure study level metadata button does not render when
  the resourceInfo does not include (#1516)
• the study metadata field name reference from the discovery config (#1516)
• Adds file name sanitation for zipped JSON files as part of VLMD download.
  (#1512)
• Adds space in error message for failed VLMD downloads. (#1512)

Bug Fixes

• Updates the logic for the study level metadata button so it is not disabled
  even when there is noData (#1516)