update config

.gitignore

@@ -110,3 +110,11 @@ dmypy.json
 .pytype/
 # Cython debug symbols
 cython_debug/
+# Files under data folder
+/data/*
+# Files under log folder
+/logs/*
+# Files under results
+/results/*
+# Files under auspice
+/auspice/*

config/auspice_config.json

@@ -3,7 +3,7 @@
   "maintainers": [
     {"name": "Gen3"}
   ],
-  "build_url": "https://github.com/yilinxu/gen3-augur",
+  "build_url": "https://github.com/uc-cdis/gen3-augur",
   "colorings": [
     {
       "key": "gt",
@@ -29,11 +29,28 @@
       "key": "region",
       "title": "Region",
       "type": "categorical"
+    },
+     {
+      "key": "division",
+      "title": "Division",
+      "type": "categorical"
+    },
+    {
+      "key": "location",
+      "title": "Location",
+      "type": "categorical"
+    },
+    {
+      "key": "clade",
+      "title": "Clade",
+      "type": "categorical"
     }
   ],
   "geo_resolutions": [
     "country",
-    "region"
+    "region",
+    "division",
+    "location"
   ],
   "panels": [
      "tree",
@@ -44,6 +61,8 @@
   },
   "filters": [
     "country",
-    "region"
+    "region",
+    "division",
+    "location"
   ]
 }

config/clades.tsv

@@ -1,31 +1,18 @@
 clade	gene	site	alt
-
-
-A1a	ORF3a	251	V
-A1a	ORF1a	3606	F
-
-A2	S	614	G
-A2a	ORF1b	314	L
-
-A3	ORF1a	378	I
-A3	ORF1a	3606	F
-
-A6	nuc	514	C
-
-
-A7	ORF1a	3220	V
-
-
-
-
-B	ORF8	84	S
-
-B1	ORF8	84	S
-B1	nuc	18060	T
-
-B2	ORF8	84	S
-B2	nuc	29095	T
-
-B4	ORF8	84	S
-B4	N	202	N
-B4	N	202	N
+19A	nuc	8782	C
+19A 	nuc	14408	C
+19B	nuc	8782	T
+19B	nuc	28144	C
+20A	nuc	8782	C
+20A	nuc	14408	T
+20A	nuc	23403	G
+20B	nuc	8782	C
+20B	nuc	14408	T
+20B	nuc	23403	G
+20B	nuc	28881	A
+20B	nuc	28882	A
+20C	nuc	1059	T
+20C	nuc	8782	C
+20C	nuc	14408	T
+20C	nuc	23403	G
+20C	nuc	25563	T