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fix(docker): file should be attach after docker created #1

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fix(docker): file should be attach after docker created #1

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a566d59
Initial commit
yilinxu May 22, 2020
11ab4ec
Create LICENSE
yilinxu May 22, 2020
63de932
Create setup.py
yilinxu May 22, 2020
79b8ad5
Update README.md
yilinxu May 22, 2020
9d80d77
Create requirements.txt
yilinxu May 22, 2020
2756347
Create environment.yml
yilinxu May 22, 2020
c01c13e
Update requirements.txt
yilinxu May 22, 2020
a9e1e1a
Create functions_test.py
yilinxu May 22, 2020
d24b5e8
Create util.py
yilinxu May 22, 2020
85568da
Update setup.py
yilinxu May 22, 2020
79f19b5
Update environment.yml
yilinxu May 22, 2020
12d58bf
Update requirements.txt
yilinxu May 22, 2020
8652c63
Update setup.py
yilinxu May 22, 2020
4209400
Update setup.py
yilinxu May 22, 2020
42e06ad
Update setup.py
yilinxu May 22, 2020
add20c9
Update setup.py
yilinxu May 22, 2020
de0c293
Create .travis.yml
yilinxu May 22, 2020
7fb80d3
Create .gitignore
yilinxu May 22, 2020
0eb3ee6
Update README.md
yilinxu May 22, 2020
f1f25d2
Update README.md
yilinxu May 22, 2020
bad71ca
Update README.md
yilinxu May 22, 2020
1a5d1d4
Update README.md
yilinxu May 22, 2020
4822d5a
Create exe
yilinxu May 22, 2020
fefd058
Add files via upload
yilinxu May 22, 2020
a17e53f
Delete exe
yilinxu May 22, 2020
e26ed4e
Update README.md
yilinxu May 22, 2020
194527b
Update README.md
yilinxu May 22, 2020
cad1302
Create credential
yilinxu May 22, 2020
6a0ef51
Delete credential
yilinxu May 22, 2020
326dcfe
Update .gitignore
yilinxu May 22, 2020
0afeb95
Update README.md
yilinxu May 22, 2020
d4a46cb
Update README.md
yilinxu May 22, 2020
7715985
Update README.md
yilinxu May 22, 2020
1067977
Update README.md
yilinxu May 22, 2020
bf9f99c
Update README.md
yilinxu May 22, 2020
c5742b7
Update README.md
yilinxu May 22, 2020
3abcd92
Update README.md
yilinxu May 22, 2020
17302eb
Create manifest.json
yilinxu May 22, 2020
ea526cd
Create manifest.json
yilinxu May 22, 2020
3323ce4
Add files via upload
yilinxu May 22, 2020
4f0d845
Add files via upload
yilinxu May 22, 2020
5cc4a37
Delete manifest.json
yilinxu May 22, 2020
687193c
Delete manifest.json
yilinxu May 22, 2020
af675e7
Create test-manifest.json
yilinxu May 22, 2020
c6ef2be
Create test-manifest.json
yilinxu May 22, 2020
e12b96c
Delete test.json
yilinxu May 22, 2020
98ed0eb
Delete test.json
yilinxu May 22, 2020
9e271ae
Create raffle
yilinxu May 22, 2020
58ffd9b
Create raffle
yilinxu May 22, 2020
908a787
Add files via upload
yilinxu May 22, 2020
4137404
Add files via upload
yilinxu May 22, 2020
67a51d4
Delete raffle
yilinxu May 22, 2020
2db4b5b
Delete raffle
yilinxu May 22, 2020
d900b1b
Update .gitignore
yilinxu May 22, 2020
65291b5
Update .gitignore
yilinxu May 22, 2020
4212c9b
Create gb
yilinxu May 22, 2020
14a22ed
Create gb
yilinxu May 22, 2020
a65d447
Add files via upload
yilinxu May 22, 2020
b6d6e58
Add files via upload
yilinxu May 22, 2020
7128fe6
rawbg
yilinxu May 22, 2020
c26838e
rawbg
yilinxu May 22, 2020
f740e93
Update .gitignore
yilinxu May 22, 2020
33035d5
Update .gitignore
yilinxu May 22, 2020
20590a3
Delete gb
yilinxu May 22, 2020
178ba77
Delete gb
yilinxu May 22, 2020
56128ed
init
yilinxu May 22, 2020
12d5ea3
init
yilinxu May 22, 2020
14a2414
parse gb
yilinxu May 22, 2020
e61b091
parse gb
yilinxu May 22, 2020
49cbf3e
parse util
yilinxu May 22, 2020
f0bedc7
parse util
yilinxu May 22, 2020
8373f2f
update pyutils
yilinxu May 26, 2020
c07fc83
update pyutils
yilinxu May 26, 2020
131d45d
up
yilinxu May 27, 2020
409180b
up
yilinxu May 27, 2020
1cfd9fa
reorg scripts
yilinxu May 29, 2020
1e80941
reorg scripts
yilinxu May 29, 2020
a06b32b
add more fun
yilinxu Jun 1, 2020
0c337ea
add more fun
yilinxu Jun 1, 2020
6244342
refactor
yilinxu Jun 1, 2020
283c505
refactor
yilinxu Jun 1, 2020
dbec1ba
refactor
yilinxu Jun 4, 2020
0c25ccc
refactor
yilinxu Jun 4, 2020
39a99b2
refactor
yilinxu Jun 4, 2020
1a039b4
refactor
yilinxu Jun 4, 2020
289a50b
refactor
yilinxu Jun 4, 2020
b647fc1
refactor
yilinxu Jun 4, 2020
bc6c4c7
refactor
yilinxu Jun 5, 2020
5ce6fc0
refactor
yilinxu Jun 5, 2020
b580a19
refactor
yilinxu Jun 5, 2020
14ea20b
refactor
yilinxu Jun 5, 2020
f763a6e
add covid19 genome files
yilinxu Jun 9, 2020
f93c2fd
.ignore
yilinxu Jun 9, 2020
e498053
.ignore
yilinxu Jun 9, 2020
9087bb2
ignore
yilinxu Jun 9, 2020
e58c318
update ignore
yilinxu Jun 9, 2020
9411eed
ignore
yilinxu Jun 9, 2020
15cd7dc
.gitignore
yilinxu Jun 9, 2020
4075481
rm raw files
yilinxu Jun 9, 2020
7b6f51d
reorg raw files
yilinxu Jun 9, 2020
6157d8e
regor raw files
yilinxu Jun 9, 2020
e7132be
update script
yilinxu Jun 9, 2020
488f045
reinit
yilinxu Jun 9, 2020
93d006f
gitignore
yilinxu Jun 9, 2020
532b60c
commit
yilinxu Jun 9, 2020
9add78b
raw files
yilinxu Jun 9, 2020
156d6e1
resolve conflict
yilinxu Jun 9, 2020
9663d07
rm log
yilinxu Jun 9, 2020
104094a
refactor
yilinxu Jun 9, 2020
41da9c4
reformat header
yilinxu Jun 9, 2020
66445cc
strain
yilinxu Jun 9, 2020
1c6220f
strain
yilinxu Jun 9, 2020
ff7910d
strain
yilinxu Jun 9, 2020
4f4ab15
strain
yilinxu Jun 9, 2020
afa2224
handle none covid19 sample
yilinxu Jun 10, 2020
85a0ab3
handle non-covid19 file
yilinxu Jun 10, 2020
471d414
remove non covid19 file
yilinxu Jun 10, 2020
9ea7cd2
add sample result
yilinxu Jun 11, 2020
7ba9a5e
augur 8.0.0
yilinxu Jun 18, 2020
3b757a9
rm run-augur
yilinxu Jun 18, 2020
611cd40
update parse_genbank.py to handle date
yilinxu Jun 21, 2020
d7e82f9
handle date
yilinxu Jun 21, 2020
ebd5797
handle date
yilinxu Jun 21, 2020
257260c
handle date
yilinxu Jun 21, 2020
4b50f74
handle date
yilinxu Jun 21, 2020
193c97a
handle date
yilinxu Jun 21, 2020
adcb27e
handle date
yilinxu Jun 21, 2020
a8acbaa
handle date
yilinxu Jun 21, 2020
87ac95b
add unit test
yilinxu Jun 23, 2020
a0a2dcd
unit test
yilinxu Jun 23, 2020
41a5ba7
unit test
yilinxu Jun 25, 2020
eba0e54
country region mapping
yilinxu Jun 29, 2020
c33efcd
country region mapping
yilinxu Jun 29, 2020
01c8d59
relative path
yilinxu Jun 29, 2020
c2e8771
relative path
yilinxu Jun 29, 2020
7890f06
relative path
yilinxu Jun 29, 2020
c0ac9de
country region mapping
yilinxu Jun 30, 2020
9269bed
refactor
yilinxu Jul 1, 2020
3c5b0c7
customize config
yilinxu Jul 1, 2020
5cb8048
test unit
yilinxu Jul 1, 2020
f4b1996
refactor
yilinxu Jul 1, 2020
9b02cd2
unit test
yilinxu Jul 1, 2020
9c2e1f5
refactor
yilinxu Jul 1, 2020
739c6a5
refactor
yilinxu Jul 1, 2020
6299867
refactor
yilinxu Jul 1, 2020
18d233a
refactor
yilinxu Jul 7, 2020
3e29371
unit test
yilinxu Jul 8, 2020
e5e08bf
unit test
yilinxu Jul 8, 2020
f2c03cd
fix imports for test_common_io
paulineribeyre Jul 8, 2020
b0eb051
unit test
yilinxu Jul 8, 2020
e95574b
unit test
yilinxu Jul 8, 2020
8e3cacb
add gen3 query
yilinxu Jul 11, 2020
48442ac
Delete credentials.json
yilinxu Jul 11, 2020
3d45d6d
query
yilinxu Jul 16, 2020
485afa4
Merge branch 'master' of https://github.com/yilinxu/gen3-augur
yilinxu Jul 16, 2020
6c0e98d
manifest
yilinxu Jul 16, 2020
f490ba0
commit hook
yilinxu Jul 22, 2020
bac5148
commit hook
yilinxu Jul 22, 2020
f2ddecc
pipeline
yilinxu Jul 25, 2020
5b55fd7
Update README.md
yilinxu Jul 25, 2020
10d571c
fix(docker): file should be attach after docker created
thanh-nguyen-dang Aug 21, 2020
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6 changes: 5 additions & 1 deletion .gitignore
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Original file line number Diff line number Diff line change
@@ -1 +1,5 @@
/gen3/*credential*
*credential*
.idea
*.fasta
*.bg
*.pyc
6 changes: 6 additions & 0 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
repos:
- repo: [email protected]:Yelp/detect-secrets
rev: v0.13.1
hooks:
- id: detect-secrets
args: ['--baseline', '.secrets.baseline']
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