Merge pull request #300 from umccr/test/file-tidy

test(data): remove unused files and update README.md
umccr · Jan 24, 2025 · 28f7c84 · 28f7c84
2 parents fc84e7e + 13601d1
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diff --git a/data/README.md b/data/README.md
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+# Test files for htsget-rs
+
+This directory contains test and example files for htsget-rs.
+
+## Crypt4GH
+
+Crypt4GH keys were generated by running:
+
+```sh
+cargo install crypt4gh
+crypt4gh keygen --sk c4gh/keys/alice.sec --pk c4gh/keys/alice.pub
+crypt4gh keygen --sk c4gh/keys/bob.sec --pk c4gh/keys/bob.pub
+```
+
+Files were encrypted by running:
+
+```sh
+crypt4gh encrypt --sk c4gh/keys/alice.sec --recipient_pk c4gh/keys/bob.pub < bam/htsnexus_test_NA12878.bam > c4gh/htsnexus_test_NA12878.bam.c4gh
+crypt4gh encrypt --sk c4gh/keys/alice.sec --recipient_pk c4gh/keys/bob.pub < bcf/sample1-bcbio-cancer.bcf > c4gh/sample1-bcbio-cancer.bcf.c4gh
+crypt4gh encrypt --sk c4gh/keys/alice.sec --recipient_pk c4gh/keys/bob.pub < bcf/spec-v4.3.bcf > c4gh/spec-v4.3.bcf.c4gh
+crypt4gh encrypt --sk c4gh/keys/alice.sec --recipient_pk c4gh/keys/bob.pub < cram/htsnexus_test_NA12878.cram > c4gh/htsnexus_test_NA12878.cram.c4gh
+crypt4gh encrypt --sk c4gh/keys/alice.sec --recipient_pk c4gh/keys/bob.pub < vcf/sample1-bcbio-cancer.vcf.gz > c4gh/sample1-bcbio-cancer.vcf.gz.c4gh
+crypt4gh encrypt --sk c4gh/keys/alice.sec --recipient_pk c4gh/keys/bob.pub < vcf/spec-v4.3.vcf.gz > c4gh/spec-v4.3.vcf.gz.c4gh
+```
+
diff --git a/data/bam/htsnexus_test_NA12878.bam.blocks.yaml b/data/bam/htsnexus_test_NA12878.bam.blocks.yaml
diff --git a/data/bcf/sample1-bcbio-cancer-uncompressed b/data/bcf/sample1-bcbio-cancer-uncompressed
diff --git a/data/bcf/vcf-spec-v4.3.bcf → data/bcf/spec-v4.3.bcf b/data/bcf/vcf-spec-v4.3.bcf → data/bcf/spec-v4.3.bcf
diff --git a/data/bcf/vcf-spec-v4.3.bcf.csi → data/bcf/spec-v4.3.bcf.csi b/data/bcf/vcf-spec-v4.3.bcf.csi → data/bcf/spec-v4.3.bcf.csi
diff --git a/data/bcf/vcf-spec-v4.3.bcf.gzi → data/bcf/spec-v4.3.bcf.gzi b/data/bcf/vcf-spec-v4.3.bcf.gzi → data/bcf/spec-v4.3.bcf.gzi
diff --git a/data/bcf/vcf-spec-v4.3-uncompressed b/data/bcf/vcf-spec-v4.3-uncompressed
diff --git a/data/c4gh/README.md b/data/c4gh/README.md
diff --git a/data/c4gh/sample1-bcbio-cancer.vcf.gz.c4gh b/data/c4gh/sample1-bcbio-cancer.vcf.gz.c4gh
diff --git a/data/c4gh/sample1-bcbio-cancer.vcf.gz.tbi b/data/c4gh/sample1-bcbio-cancer.vcf.gz.tbi
diff --git a/data/c4gh/spec-v4.3.bcf.c4gh b/data/c4gh/spec-v4.3.bcf.c4gh
diff --git a/data/c4gh/spec-v4.3.bcf.csi b/data/c4gh/spec-v4.3.bcf.csi
diff --git a/data/vcf/sample1-bcbio-cancer_uncompressed.vcf b/data/vcf/sample1-bcbio-cancer_uncompressed.vcf
diff --git a/data/vcf/spec-v4.3_uncompressed.vcf b/data/vcf/spec-v4.3_uncompressed.vcf