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Catch-up with v1.2.4 release#5

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mr-c wants to merge 41 commits intovgteam:mastervgteam/Complete-Striped-Smith-Waterman-Library:masterfrom mr-c:rebase_v1.2.4mr-c/Complete-Striped-Smith-Waterman-Library:rebase_v1.2.4Copy head branch name to clipboard

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Commits

Commits on Jul 20, 2018

• Makefile is changed for easy to make and test the core C programs.

  

  Mengyao Zhao

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Commits on Mar 5, 2019

• different

  mengyao

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• license statement change

  mengyao

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• remove commented line

  mengyao

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Commits on Mar 12, 2019

• Add Farrar's BSD license.

  mengyao

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Commits on Apr 25, 2019

• Correct calls to read_matrix() in case of a custom weight matrix.

  cbrueffer

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• Correct spelling of Protein.

  cbrueffer

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Commits on Jun 2, 2019

• Modify reverse complement base error

  friend1ws

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Commits on Jun 10, 2019

• Usage info fixes.

  cbrueffer

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• Make the case work where the user gives an explicit path to libssw.so

  cbrueffer

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Commits on Oct 29, 2019

• Respect predefined CFLAGS and LDFLAGS

  landesfeind

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Commits on Jul 7, 2020

• R package link added

  

  Mengyao Zhao

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• R package link added, update date

  

  Mengyao Zhao

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• updated title

  

  Mengyao Zhao

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Commits on Mar 28, 2022

• compiled on Mac M1CPU

  mengyao

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• sse2neon.h added for mac M1CPU

  mengyao

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Commits on Apr 1, 2022

• memory checking

  

  Mengyao Zhao

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Commits on Apr 4, 2022

• remove segmentation fault

  

  Mengyao Zhao

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• compile on mac

  mengyao

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• remove seg fault

  mengyao

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Commits on Apr 10, 2022

• the flag parameter is added for ssw_align

  

  Mengyao Zhao

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• memory leak is removed

  

  Mengyao Zhao

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Commits on Apr 15, 2022

• better error message

  

  Mengyao Zhao

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Commits on Apr 17, 2022

• warning in ssw.c ssw_align

  

  Mengyao Zhao

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Commits on Apr 19, 2022

• removed an error message

  

  Mengyao Zhao

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Commits on May 9, 2022

• update pyssw.py for python3

  

  Mengyao Zhao

  committed
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Commits on May 20, 2022

• Fix Back Trace Error in Alignment mengyao#78

  

  Mengyao Zhao

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• removed nMaskLen error in pyssw.py

  

  Mengyao Zhao

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• updated README date

  

  Mengyao Zhao

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  4dff173

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• change make to make python, c++ and examples as default

  

  Mengyao Zhao

  committed
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Commits on May 21, 2022

• Merge branch 'master' into master

  mengyao

  authored
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• Merge pull request mengyao#67 from landesfeind/master

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  mengyao

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• Merge pull request mengyao#65 from cbrueffer/python_wrapper_fix

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  mengyao

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• Merge pull request mengyao#64 from friend1ws/patch-1

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  mengyao

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• Merge branch 'master' into pyssw_fixes

  cbrueffer

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  49f04c8

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• changed some demo files

  

  Mengyao Zhao

  committed
  de052a7

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• Merge pull request mengyao#62 from cbrueffer/pyssw_fixes

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  mengyao

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Commits on May 22, 2022

• catch weight matrix reading errors

  

  Mengyao Zhao

  committed
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• change Makefile back

  

  Mengyao Zhao

  committed
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Commits on May 23, 2022

• fixed conflict in pyssw.py

  

  Mengyao Zhao

  committed
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Commits on Dec 2, 2022

• Merge tag 'v1.2.4' into rebase_v1.2.4

  mr-c

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