Merge pull request #213 from vib-singlecell-nf/develop

Develop Former-commit-id: fc1760f
vib-singlecell-nf · May 14, 2020 · 18d7387 · 18d7387
2 parents f68f3be + d5e540d
commit 18d7387
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diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md
@@ -38,7 +38,7 @@ If applicable, add screenshots to help explain your problem.
 
 **Please complete the following information:**
  - OS: [e.g. Ubuntu]
- - Nextflow Version: [e.g. 19.12.0-edge]
+ - Nextflow Version: [e.g. 20.04.1]
  - vsn-pipelines Version: [e.g. 0.14.2]
 
 **Additional context**

diff --git a/.github/workflows/bbknn.yml b/.github/workflows/bbknn.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Get sample data

diff --git a/.github/workflows/bbknn_scenic.yml b/.github/workflows/bbknn_scenic.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Get sample data

diff --git a/.github/workflows/harmony.yml b/.github/workflows/harmony.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Get sample data

diff --git a/.github/workflows/mnncorrect.yml b/.github/workflows/mnncorrect.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Get sample data

diff --git a/.github/workflows/scenic.yml b/.github/workflows/scenic.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Run scenic test

diff --git a/.github/workflows/scenic_multiruns.yml b/.github/workflows/scenic_multiruns.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Run scenic test

diff --git a/.github/workflows/single_sample.yml b/.github/workflows/single_sample.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Get sample data

diff --git a/.github/workflows/single_sample_scenic.yml b/.github/workflows/single_sample_scenic.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Get sample data

diff --git a/.github/workflows/single_sample_scenic_multiruns.yml b/.github/workflows/single_sample_scenic_multiruns.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Get sample data

diff --git a/.github/workflows/single_sample_scrublet.yml b/.github/workflows/single_sample_scrublet.yml
@@ -19,7 +19,7 @@ jobs:
         submodules: true
     - name: Install Nextflow
       run: |
-        export NXF_VER='19.12.0-edge'
+        export NXF_VER='20.04.1'
         wget -qO- get.nextflow.io | bash
         sudo mv nextflow /usr/local/bin/
     - name: Get sample data