Remove submodules from CI tests

vib-singlecell-nf · Jan 26, 2021 · 71aac25 · 71aac25
1 parent 941e853
commit 71aac25
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diff --git a/.github/workflows/bbknn.yml b/.github/workflows/bbknn.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/bbknn_scenic.yml b/.github/workflows/bbknn_scenic.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/decontx.yml b/.github/workflows/decontx.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/harmony.yml b/.github/workflows/harmony.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/mnncorrect.yml b/.github/workflows/mnncorrect.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/scenic.yml b/.github/workflows/scenic.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/scenic_multiruns.yml b/.github/workflows/scenic_multiruns.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/single_sample.yml b/.github/workflows/single_sample.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/single_sample_decontx.yml b/.github/workflows/single_sample_decontx.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/single_sample_decontx_scrublet.yml b/.github/workflows/single_sample_decontx_scrublet.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/single_sample_param_exploration.yml b/.github/workflows/single_sample_param_exploration.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/single_sample_scenic.yml b/.github/workflows/single_sample_scenic.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/single_sample_scenic_multiruns.yml b/.github/workflows/single_sample_scenic_multiruns.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'

diff --git a/.github/workflows/single_sample_scrublet.yml b/.github/workflows/single_sample_scrublet.yml
@@ -17,8 +17,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        submodules: true
     - name: Install Nextflow
       run: |
         export NXF_VER='20.10.0'