This repository has been archived by the owner on Apr 19, 2023. It is now read-only.
v0.21.0
- Merge #230 Closes #228 Add DecontX
- Merge #237 Closes #229 Add SoupX
- Closes #233 3a66a0c Improve interoperability with Scanpy
- Closes #234 Merge final h5ad files when in param exploration mode
- Closes #235 Store log files in log folder
- c1cf114 Support for h5ad built with
anndata>=0.7.xfor h5ad to loom conversion - Bug fixes #227 #236
- Bug fix 0bbffbc Regressing out variables should be performed after HVG and before feature scaling
- New label for report NXF processes:
compute_resources__report - [scenic] 455a165 Allow to use --all_modules argument when running the cisTarget step
- [scanpy] 06f4a41 Fix bug cells not matching when running mnncorrect batch effect correction pipeline