Skip to content

Commit

Permalink
Hourly export update
Browse files Browse the repository at this point in the history
  • Loading branch information
@actions-user
actions-user committed Jan 16, 2025
1 parent b3eb2b9 commit 2c7a801
Show file tree
Hide file tree
Showing 17 changed files with 154 additions and 153 deletions.
17 changes: 8 additions & 9 deletions bugsigdb_signatures_genus_metaphlan.gmt
View file

Large diffs are not rendered by default.

15 changes: 7 additions & 8 deletions bugsigdb_signatures_genus_metaphlan_exact.gmt
View file

Large diffs are not rendered by default.

17 changes: 8 additions & 9 deletions bugsigdb_signatures_genus_ncbi.gmt
View file
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-16_05:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 2759736 1386
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 2759736
Expand Down Expand Up @@ -5432,7 +5432,7 @@ bsdb:1225/12/2_Self-reported-educational-attainment:Subjects-from-wealthier-hous
bsdb:1225/13/1_Social-interaction-measurement:Subjects-from-the-wealthier-households-based-on-social-factors_vs_Subjects-from-the-least-well-off-households-based-on-social-factors_UP NA 239759 816 375288 909656
bsdb:1225/13/2_Social-interaction-measurement:Subjects-from-the-wealthier-households-based-on-social-factors_vs_Subjects-from-the-least-well-off-households-based-on-social-factors_DOWN NA 239759 816 29521 157
bsdb:1225/16/1_Lifestyle-measurement:Phenotypes-with-strain-phylogenetic-information_vs_Phenotypes-without-strain-phylogenetic-information_UP NA 816 838 2974251 577309 1926672 909656 2527773 872
bsdb:1225/16/2_Lifestyle-measurement:Phenotypes-with-strain-phylogenetic-information_vs_Phenotypes-without-strain-phylogenetic-information_DOWN NA 239934 239759 2527773 838 2974251
bsdb:1225/16/2_Lifestyle-measurement:Phenotypes-with-strain-phylogenetic-information_vs_Phenotypes-without-strain-phylogenetic-information_DOWN NA 2527773
bsdb:1226/1/1_Response-to-diet:0.2%-MC2-Diet-T2_vs_0.2%-CTR-Diet-T2_UP NA 106589 963 1543705
bsdb:1226/2/1_Response-to-diet:0.2%-MN3-Diet-T2_vs_0.2%-CTR-Diet-T2_UP NA 106589 963 1543705
bsdb:1226/3/1_Response-to-diet:4%-MN3-Pyloric-caecum_vs_4%-CTR-Diet-Pyloric-caecum_UP NA 286
Expand Down Expand Up @@ -5519,23 +5519,22 @@ bsdb:1232/3/2_Aggressive-periodontitis:GCP--Deep-pocket_vs_GCP--Shallow-pocket_D
bsdb:1233/1/1_Ketogenic-diet:treatment-group_vs_pre-treatment-group_UP NA 816
bsdb:1233/1/2_Ketogenic-diet:treatment-group_vs_pre-treatment-group_DOWN NA 469 1348911 216851 55968 286
bsdb:1233/2/1_Response-to-ketogenic-diet:non-responders_vs_responders_UP NA 239759 244127 572511 189330 84111 1407607 644652 209 459786 1263 1301
bsdb:1235/1/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 1980681 1263 189330 28050 572511 1573535 33042 292632 841 580596
bsdb:1235/1/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 1766253 239759 207244 102106 33042 1407607 2172 375288 1473205 40544 3025755 816 1678 84111 1485 572511 1348911 1470349 216851 644652
bsdb:1235/1/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 572511 580596 1980681 33042 189330 1573535 28050 841 1263 292632
bsdb:1235/1/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 1766253 239759 207244 816 1678 572511 1470349 1485 102106 1348911 33042 84111 216851 1407607 644652 2172 375288 1473205 40544 3025755 1506553
bsdb:1235/2/1_Response-to-drug:Loxapine-Succinate-Low-Concentration(LOX-Low)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Entacapone-Concentration(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 1980681
bsdb:1235/2/2_Response-to-drug:Loxapine-Succinate-Low-Concentration(LOX-Low)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Entacapone-Concentration(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 816 1654
bsdb:1235/3/1_Response-to-drug:Entacapone-Low-Concentration(ENT-Low)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-High(ENT-High)--after-24hours-of-incubation_UP NA 1980681
bsdb:1235/3/2_Response-to-drug:Entacapone-Low-Concentration(ENT-Low)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-High(ENT-High)--after-24hours-of-incubation_DOWN NA 292632
bsdb:1235/4/1_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low),-Entacapone-High(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 239759 1980681 207244 572511
bsdb:1235/4/2_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low),-Entacapone-High(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 816 1678 1485 946234 577309 3025755
bsdb:1235/4/1_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low),-Entacapone-High(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 239759 207244 572511 1980681
bsdb:1235/4/2_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low),-Entacapone-High(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 816 1678 1485 946234 577309 3025755 1506553
bsdb:1235/5/1_Response-to-drug:Loxapine-Succinate-Low-Concentration(LOX-Low)-after-6hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High)-and-Entacapone-Low(ENT-Low)--after-6hours-of-incubation_UP NA 1301
bsdb:1235/5/2_Response-to-drug:Loxapine-Succinate-Low-Concentration(LOX-Low)-after-6hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High)-and-Entacapone-Low(ENT-Low)--after-6hours-of-incubation_DOWN NA 816
bsdb:1235/6/1_Response-to-drug:Entacapone-Low-Concentration(ENT-Low)-after-6hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High)-and-Loxapine-Succinate-Low(LOX-Low)-after-6hours-of-incubation_UP NA 1301
bsdb:1235/7/1_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-6hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)-after-6hours-of-incubation_UP NA 1301
bsdb:1235/7/2_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-6hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)-after-6hours-of-incubation_DOWN NA 1485
bsdb:1235/7/2_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-6hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)-after-6hours-of-incubation_DOWN NA 816
bsdb:1235/8/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-1_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_UP NA 459786 1980681 572511 216851 841 1678
bsdb:1235/8/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-1_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_DOWN NA 816 572511 189330 216851 946234 1407607 1573535 1506553 2759736 248744 3025755
bsdb:1235/9/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-2_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_UP NA 2759736 1654 1926677 102106 86331 1573535 117563 1980681 580596 248744 397864 216851 29465 572511 544 1678 28050 1505652 906 1766253 904
bsdb:1235/9/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-2_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_DOWN NA 33042 375288 40544 816 572511 207244 216851 1407607 3025755 239759 574697 1980681 459786 84108
bsdb:1235/9/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-2_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_DOWN NA 239759 207244 816 572511 574697 1980681 33042 216851 1407607 459786 375288 84108 40544 3025755
bsdb:1235/10/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-3_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_UP NA 2759736 1654 1926677 102106 86331 1573535 117563 248744 580596 397864 216851 29465 572511 544 1678 28050 1505652 906 904 1766253
bsdb:1235/10/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-3_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_DOWN NA 239759 207244 816 572511 574697 1980681 33042 216851 1407607 459786 375288 40544 3025755
bsdb:1237/3/1_Response-to-transplant:Fecal-samples-at-the-end-of-the-experiment(Week-12)_vs_Fecal-samples-baseline(Week-0)_UP NA 2676048
Expand Down
15 changes: 7 additions & 8 deletions bugsigdb_signatures_genus_ncbi_exact.gmt
View file
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-16_05:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 1386
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244
Expand Down Expand Up @@ -4695,23 +4695,22 @@ bsdb:1232/3/2_Aggressive-periodontitis:GCP--Deep-pocket_vs_GCP--Shallow-pocket_D
bsdb:1233/1/1_Ketogenic-diet:treatment-group_vs_pre-treatment-group_UP NA 816
bsdb:1233/1/2_Ketogenic-diet:treatment-group_vs_pre-treatment-group_DOWN NA 469 1348911 216851 55968 286
bsdb:1233/2/1_Response-to-ketogenic-diet:non-responders_vs_responders_UP NA 239759 244127 572511 189330 84111 1407607 644652 209 459786 1263 1301
bsdb:1235/1/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 1980681 1263 189330 28050 572511 1573535 33042 292632 841 580596
bsdb:1235/1/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 1766253 239759 207244 102106 33042 1407607 2172 375288 1473205 40544 3025755 816 1678 84111 1485 572511 1348911 1470349 216851 644652
bsdb:1235/1/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 572511 580596 1980681 33042 189330 1573535 28050 841 1263 292632
bsdb:1235/1/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 1766253 239759 207244 816 1678 572511 1470349 1485 102106 1348911 33042 84111 216851 1407607 644652 2172 375288 1473205 40544 3025755 1506553
bsdb:1235/2/1_Response-to-drug:Loxapine-Succinate-Low-Concentration(LOX-Low)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Entacapone-Concentration(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 1980681
bsdb:1235/2/2_Response-to-drug:Loxapine-Succinate-Low-Concentration(LOX-Low)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Entacapone-Concentration(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 816 1654
bsdb:1235/3/1_Response-to-drug:Entacapone-Low-Concentration(ENT-Low)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-High(ENT-High)--after-24hours-of-incubation_UP NA 1980681
bsdb:1235/3/2_Response-to-drug:Entacapone-Low-Concentration(ENT-Low)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High),-Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-High(ENT-High)--after-24hours-of-incubation_DOWN NA 292632
bsdb:1235/4/1_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low),-Entacapone-High(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 239759 1980681 207244 572511
bsdb:1235/4/2_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low),-Entacapone-High(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 816 1678 1485 946234 577309 3025755
bsdb:1235/4/1_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low),-Entacapone-High(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_UP NA 239759 207244 572511 1980681
bsdb:1235/4/2_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-24-hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low),-Entacapone-High(ENT-High)-and-Entacapone-Low(ENT-Low)--after-24hours-of-incubation_DOWN NA 816 1678 1485 946234 577309 3025755 1506553
bsdb:1235/5/1_Response-to-drug:Loxapine-Succinate-Low-Concentration(LOX-Low)-after-6hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High)-and-Entacapone-Low(ENT-Low)--after-6hours-of-incubation_UP NA 1301
bsdb:1235/5/2_Response-to-drug:Loxapine-Succinate-Low-Concentration(LOX-Low)-after-6hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High)-and-Entacapone-Low(ENT-Low)--after-6hours-of-incubation_DOWN NA 816
bsdb:1235/6/1_Response-to-drug:Entacapone-Low-Concentration(ENT-Low)-after-6hrs-of-incubation_vs_Loxapine-Succinate-High-(LOX-High)-and-Loxapine-Succinate-Low(LOX-Low)-after-6hours-of-incubation_UP NA 1301
bsdb:1235/7/1_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-6hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)-after-6hours-of-incubation_UP NA 1301
bsdb:1235/7/2_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-6hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)-after-6hours-of-incubation_DOWN NA 1485
bsdb:1235/7/2_Response-to-drug:Loxapine-Succinate-High-Concentration(LOX-High)-after-6hrs-of-incubation_vs_Loxapine-Succinate-Low(LOX-Low)-and-Entacapone-Low(ENT-Low)-after-6hours-of-incubation_DOWN NA 816
bsdb:1235/8/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-1_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_UP NA 459786 1980681 572511 216851 841 1678
bsdb:1235/8/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-1_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_DOWN NA 816 572511 189330 216851 946234 1407607 1573535 1506553 2759736 248744 3025755
bsdb:1235/9/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-2_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_UP NA 2759736 1654 1926677 102106 86331 1573535 117563 1980681 580596 248744 397864 216851 29465 572511 544 1678 28050 1505652 906 1766253 904
bsdb:1235/9/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-2_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_DOWN NA 33042 375288 40544 816 572511 207244 216851 1407607 3025755 239759 574697 1980681 459786 84108
bsdb:1235/9/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-2_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_DOWN NA 239759 207244 816 572511 574697 1980681 33042 216851 1407607 459786 375288 84108 40544 3025755
bsdb:1235/10/1_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-3_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_UP NA 2759736 1654 1926677 102106 86331 1573535 117563 248744 580596 397864 216851 29465 572511 544 1678 28050 1505652 906 904 1766253
bsdb:1235/10/2_Response-to-drug:Entacapone-High-Concentration(ENT-High)-after-24-hrs-of-incubation---Donor-3_vs_No-drug---Dimethyl-sulfoxide-only-(DMSO-only)_DOWN NA 239759 207244 816 572511 574697 1980681 33042 216851 1407607 459786 375288 40544 3025755
bsdb:1237/3/1_Response-to-transplant:Fecal-samples-at-the-end-of-the-experiment(Week-12)_vs_Fecal-samples-baseline(Week-0)_UP NA 2676048
Expand Down
Loading

0 comments on commit 2c7a801

Please sign in to comment.