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Hourly export update
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actions-user committed Jan 11, 2025
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4 changes: 2 additions & 2 deletions bugsigdb_signatures_mixed_metaphlan.gmt
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# BugSigDB 2025-01-10_17:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-11_06:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Alcaligenaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae k__Bacteria|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus k__Bacteria|p__Cyanobacteriota
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae
Expand Down Expand Up @@ -6528,7 +6528,7 @@ bsdb:1250/2/1_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(A
bsdb:1251/1/1_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Healthy-controls_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Anaerotruncus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae k__Bacteria|k__Bacillati|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Finegoldia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Anaerofustis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Morganella k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|s__Escherichia/Shigella sp. k__Bacteria|c__Deltaproteobacteria k__Bacteria|k__Pseudomonadati|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales k__Bacteria|k__Pseudomonadati|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Shuttleworthella
bsdb:1251/1/2_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Healthy-controls_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Megamonas k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus
bsdb:1252/1/1_Response-to-ketogenic-diet:post-ketogenic-diet-treatment_vs_pre-ketogenic-diet-treatment_UP NA k__Bacteria|k__Pseudomonadati|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Desulfovibrio
bsdb:1253/1/1_Response-to-ketogenic-diet:non-responders-pre-ketogenic-diet-treatment_vs_responders-pre--and-post-KD-treatment,-non-responders-post-KD-treatment_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium breve k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum|s__Bifidobacterium longum subsp. infantis
bsdb:1253/1/1_Response-to-ketogenic-diet:non-responders-pre-ketogenic-diet-treatment_vs_responders-pre--and-post-KD-treatment,-non-responders-post-KD-treatment_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum|s__Bifidobacterium longum subsp. infantis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium breve
bsdb:1254/1/1_Autism-spectrum-disorder:Boys-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-controls_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Eisenbergiella k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|k__Bacillati|p__Bacillota k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales
bsdb:1254/1/2_Autism-spectrum-disorder:Boys-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-controls_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|s__Escherichia/Shigella sp. k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Verrucomicrobiaceae k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Providencia k__Bacteria|k__Bacillati|p__Actinomycetota k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Dialister k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter
bsdb:1255/1/1_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Normal-Controls_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|k__Bacillati|p__Actinomycetota k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales k__Bacteria|k__Fusobacteriati|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae k__Bacteria|k__Fusobacteriati|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales k__Bacteria|k__Fusobacteriati|p__Fusobacteriota|c__Fusobacteriia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Verrucomicrobiaceae k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia
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4 changes: 2 additions & 2 deletions bugsigdb_signatures_mixed_ncbi.gmt
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# BugSigDB 2025-01-10_17:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-11_06:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 91061 1236 1654 1716 1301 162289 189330 33024 40544 2037 2049 506 186826 1300 31977 91347 1653 57037 1386 186817
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883 1117
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 57037
Expand Down Expand Up @@ -6528,7 +6528,7 @@ bsdb:1250/2/1_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(A
bsdb:1251/1/1_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Healthy-controls_UP NA 244127 216572 150022 264995 1224 91347 543 581 1940338 28221 213115 194924 177971
bsdb:1251/1/2_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Healthy-controls_DOWN NA 207244 158846 81852 1350
bsdb:1252/1/1_Response-to-ketogenic-diet:post-ketogenic-diet-treatment_vs_pre-ketogenic-diet-treatment_UP NA 872
bsdb:1253/1/1_Response-to-ketogenic-diet:non-responders-pre-ketogenic-diet-treatment_vs_responders-pre--and-post-KD-treatment,-non-responders-post-KD-treatment_UP NA 1685 216816 1682
bsdb:1253/1/1_Response-to-ketogenic-diet:non-responders-pre-ketogenic-diet-treatment_vs_responders-pre--and-post-KD-treatment,-non-responders-post-KD-treatment_UP NA 1682 1685
bsdb:1254/1/1_Autism-spectrum-disorder:Boys-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-controls_UP NA 1432051 572511 570 186803 216572 216851 1239 186801 186802
bsdb:1254/1/2_Autism-spectrum-disorder:Boys-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-controls_DOWN NA 909929 909932 31977 1236 543 91347 1940338 29465 239934 203557 48461 74201 586 201174 39948 31953 85004 1678 91061 186826 1301 1300 906 544
bsdb:1255/1/1_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Normal-Controls_UP NA 469 201174 239934 91061 31953 85004 1678 572511 186801 84107 84999 84998 189330 128827 526525 203492 203491 203490 186803 33958 186826 1578 1300 1301 203557 48461 203494
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4 changes: 2 additions & 2 deletions bugsigdb_signatures_mixed_taxname.gmt
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# BugSigDB 2025-01-10_17:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-11_06:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Bacilli Gammaproteobacteria Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Actinomycetales Actinomycetaceae Alcaligenaceae Lactobacillales Streptococcaceae Veillonellaceae Enterobacterales Corynebacteriaceae Lacticaseibacillus zeae Bacillus Bacillaceae
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus Cyanobacteriota
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes Lacticaseibacillus zeae
Expand Down Expand Up @@ -6528,7 +6528,7 @@ bsdb:1250/2/1_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(A
bsdb:1251/1/1_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Healthy-controls_UP NA Anaerotruncus Oscillospiraceae Finegoldia Anaerofustis Pseudomonadota Enterobacterales Enterobacteriaceae Morganella Escherichia/Shigella sp. Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Shuttleworthella
bsdb:1251/1/2_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Healthy-controls_DOWN NA Anaerostipes Megamonas Enterococcaceae Enterococcus
bsdb:1252/1/1_Response-to-ketogenic-diet:post-ketogenic-diet-treatment_vs_pre-ketogenic-diet-treatment_UP NA Desulfovibrio
bsdb:1253/1/1_Response-to-ketogenic-diet:non-responders-pre-ketogenic-diet-treatment_vs_responders-pre--and-post-KD-treatment,-non-responders-post-KD-treatment_UP NA Bifidobacterium breve Bifidobacterium longum Bifidobacterium longum subsp. infantis
bsdb:1253/1/1_Response-to-ketogenic-diet:non-responders-pre-ketogenic-diet-treatment_vs_responders-pre--and-post-KD-treatment,-non-responders-post-KD-treatment_UP NA Bifidobacterium longum subsp. infantis Bifidobacterium breve
bsdb:1254/1/1_Autism-spectrum-disorder:Boys-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-controls_UP NA Eisenbergiella Blautia Klebsiella Lachnospiraceae Oscillospiraceae Faecalibacterium Bacillota Clostridia Eubacteriales
bsdb:1254/1/2_Autism-spectrum-disorder:Boys-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-controls_DOWN NA Selenomonadales Negativicutes Veillonellaceae Gammaproteobacteria Enterobacteriaceae Enterobacterales Escherichia/Shigella sp. Veillonella Akkermansia Verrucomicrobiaceae Verrucomicrobiales Verrucomicrobiota Providencia Actinomycetota Dialister Bifidobacteriaceae Bifidobacteriales Bifidobacterium Bacilli Lactobacillales Streptococcus Streptococcaceae Megasphaera Citrobacter
bsdb:1255/1/1_Alzheimer's-disease:Alzheimer's-Disease-(AD)-patients_vs_Normal-Controls_UP NA Acinetobacter Actinomycetota Akkermansia Bacilli Bifidobacteriaceae Bifidobacteriales Bifidobacterium Blautia Clostridia Coriobacteriaceae Coriobacteriales Coriobacteriia Dorea Erysipelotrichaceae Erysipelotrichales Fusobacteriaceae Fusobacteriales Fusobacteriia Lachnospiraceae Lactobacillaceae Lactobacillales Lactobacillus Streptococcaceae Streptococcus Verrucomicrobiaceae Verrucomicrobiales Verrucomicrobiia
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