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Hourly export update
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actions-user committed Jan 10, 2025
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17 changes: 8 additions & 9 deletions bugsigdb_signatures_genus_metaphlan.gmt
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16 changes: 8 additions & 8 deletions bugsigdb_signatures_genus_metaphlan_exact.gmt
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5 changes: 2 additions & 3 deletions bugsigdb_signatures_genus_ncbi.gmt
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# BugSigDB 2025-01-10_13:03_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-10_14:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 2759736 1386
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 2759736
Expand Down Expand Up @@ -4548,8 +4548,7 @@ bsdb:1079/21/2_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-dise
bsdb:1079/22/1_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-2)_vs_Normal-(Cluster-2)_UP NA 32067 508215
bsdb:1079/23/1_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-3)_vs_Normal-(Cluster-3)_UP NA 1378 724 482
bsdb:1079/23/2_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-3)_vs_Normal-(Cluster-3)_DOWN NA 1380 838
bsdb:1079/24/1_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_UP NA 838 1301
bsdb:1079/24/2_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_DOWN NA 1257 724 2974251
bsdb:1079/24/2_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_DOWN NA 1257
bsdb:1079/25/1_Esophageal-adenocarcinoma:Subjects-with-GERD-on-PPI-Yes_vs_Subjects-with-GERD-on-PPI-No_UP NA 1283313 906 1213720 29465 32207
bsdb:1080/1/1_Lower-respiratory-tract-disease:Chronic-Otitis-Media-With-Effusion-(COME)-with-asthma-or-bronchiolitis_vs_Chronic-Otitis-Media-With-Effusion-(COME)-without-asthma-or-bronchiolitis_UP NA 724 1279 475
bsdb:1080/1/2_Lower-respiratory-tract-disease:Chronic-Otitis-Media-With-Effusion-(COME)-with-asthma-or-bronchiolitis_vs_Chronic-Otitis-Media-With-Effusion-(COME)-without-asthma-or-bronchiolitis_DOWN NA 1651 1716
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5 changes: 2 additions & 3 deletions bugsigdb_signatures_genus_taxname.gmt
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# BugSigDB 2025-01-10_13:03_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-10_14:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Lacticaseibacillus Bacillus
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes Lacticaseibacillus
Expand Down Expand Up @@ -4548,8 +4548,7 @@ bsdb:1079/21/2_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-dise
bsdb:1079/22/1_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-2)_vs_Normal-(Cluster-2)_UP NA Leptotrichia Rothia
bsdb:1079/23/1_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-3)_vs_Normal-(Cluster-3)_UP NA Gemella Haemophilus Neisseria
bsdb:1079/23/2_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-3)_vs_Normal-(Cluster-3)_DOWN NA Atopobium Prevotella
bsdb:1079/24/1_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_UP NA Prevotella Streptococcus
bsdb:1079/24/2_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_DOWN NA Peptostreptococcus Haemophilus Segatella
bsdb:1079/24/2_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_DOWN NA Peptostreptococcus
bsdb:1079/25/1_Esophageal-adenocarcinoma:Subjects-with-GERD-on-PPI-Yes_vs_Subjects-with-GERD-on-PPI-No_UP NA Alloprevotella Megasphaera Stomatobaculum Veillonella Rothia
bsdb:1080/1/1_Lower-respiratory-tract-disease:Chronic-Otitis-Media-With-Effusion-(COME)-with-asthma-or-bronchiolitis_vs_Chronic-Otitis-Media-With-Effusion-(COME)-without-asthma-or-bronchiolitis_UP NA Haemophilus Staphylococcus Moraxella
bsdb:1080/1/2_Lower-respiratory-tract-disease:Chronic-Otitis-Media-With-Effusion-(COME)-with-asthma-or-bronchiolitis_vs_Chronic-Otitis-Media-With-Effusion-(COME)-without-asthma-or-bronchiolitis_DOWN NA Alloiococcus Corynebacterium
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36 changes: 18 additions & 18 deletions bugsigdb_signatures_mixed_metaphlan.gmt
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8 changes: 4 additions & 4 deletions bugsigdb_signatures_species_metaphlan.gmt
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# BugSigDB 2025-01-10_13:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-10_14:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae
bsdb:1/6/1_Colorectal-adenoma:Non-advanced-conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae
Expand Down Expand Up @@ -2190,8 +2190,8 @@ bsdb:1079/22/1_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-dise
bsdb:1079/22/2_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-2)_vs_Normal-(Cluster-2)_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parahaemolyticus
bsdb:1079/23/1_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-3)_vs_Normal-(Cluster-3)_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria macacae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria meningitidis k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema medium
bsdb:1079/23/2_Gastroesophageal-reflux-disease:GERD(Gastroesophageal-reflux-disease)-(Cluster-3)_vs_Normal-(Cluster-3)_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Lancefieldella|s__Lancefieldella parvula
bsdb:1079/24/1_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella dentalis k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus vestibularis
bsdb:1079/24/2_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus influenzae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella salivae
bsdb:1079/24/1_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_UP NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella dentalis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus vestibularis
bsdb:1079/24/2_Esophageal-adenocarcinoma:Subjects-with-normal-esophagus-on-PPI-Yes_vs_Subjects-with-normal-esophagus-on-PPI-No_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus influenzae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella salivae
bsdb:1079/25/1_Esophageal-adenocarcinoma:Subjects-with-GERD-on-PPI-Yes_vs_Subjects-with-GERD-on-PPI-No_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces|s__Actinomyces graevenitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemella|s__Gemella morbillorum k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera micronuciformis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella histicola k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pallens k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella salivae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Stomatobaculum|s__Stomatobaculum longum k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus constellatus
bsdb:1079/25/2_Esophageal-adenocarcinoma:Subjects-with-GERD-on-PPI-Yes_vs_Subjects-with-GERD-on-PPI-No_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria meningitidis
bsdb:1080/1/2_Lower-respiratory-tract-disease:Chronic-Otitis-Media-With-Effusion-(COME)-with-asthma-or-bronchiolitis_vs_Chronic-Otitis-Media-With-Effusion-(COME)-without-asthma-or-bronchiolitis_DOWN NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Carnobacteriaceae|g__Alloiococcus|s__Alloiococcus otitis k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium otitidis
Expand Down Expand Up @@ -2537,7 +2537,7 @@ bsdb:1190/3/2_Simian-immunodeficiency-virus-infection:Simian-Immunodeficiency-Vi
bsdb:1190/5/1_Simian-immunodeficiency-virus-infection:KwaZulu-Natal_vs_Free_State_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. CAG:352 k__Bacteria|k__Pseudomonadati|p__Spirochaetota|s__Spirochaetes bacterium GWE2_31_10
bsdb:1190/5/2_Simian-immunodeficiency-virus-infection:KwaZulu-Natal_vs_Free_State_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|s__Lachnospiraceae bacterium 28-4 k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium CAG:56 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. CAG:873
bsdb:1190/6/2_Simian-immunodeficiency-virus-infection:KwaZulu-Natal_vs_Free_State_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|s__Lachnospiraceae bacterium 28-4 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. CAG:873
bsdb:1190/8/1_Simian-immunodeficiency-virus-infection:Male_vs_Female_UP NA k__Bacteria|p__Spirochaetota|s__Spirochaetes bacterium GWE2_31_10 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. CAG:352
bsdb:1190/8/1_Simian-immunodeficiency-virus-infection:Male_vs_Female_UP NA k__Bacteria|k__Pseudomonadati|p__Spirochaetota|s__Spirochaetes bacterium GWE2_31_10 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. CAG:352
bsdb:1190/9/1_Simian-immunodeficiency-virus-infection:Infant_vs_Adult_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|s__Escherichia/Shigella sp.
bsdb:1191/1/1_Obesity:Lean-Ghanaians-(GL)_vs_Obese-Ghanaians(GO)-+-Obese-Americans(UO)-+-Lean-Americans(UL)_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia coli k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus callidus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella copri k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella aerofaciens
bsdb:1191/1/2_Obesity:Lean-Ghanaians-(GL)_vs_Obese-Ghanaians(GO)-+-Obese-Americans(UO)-+-Lean-Americans(UL)_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques
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