fix for copier not finding panddas files

xchem · May 23, 2024 · ad3032a · ad3032a
1 parent 990b1c5
commit ad3032a
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/xchemalign/collator.py b/src/xchemalign/collator.py
@@ -189,7 +189,7 @@ def __init__(self, config_file, log_file=None, log_level=0, include_git_info=Fal
                     else:
                         panddas_paths = []
 
-                    self.logger.info("adding input", input_path)
+                    self.logger.info("adding input", input_path, "with", len(panddas_paths), "panddas event maps")
                     self.inputs.append(
                         Input(
                             self.base_path,

diff --git a/src/xchemalign/copier.py b/src/xchemalign/copier.py
@@ -204,7 +204,7 @@ def copy_files(self):
                                 num_files += 1
 
         # copy the specified csv files with the panddas info
-        self.logger.info("Copying panddas csv files")
+        self.logger.info("Copying", len(self.panddas_file_paths), "panddas csv files")
         copied_csv = []
         for panddas_path in self.panddas_file_paths:
             f = self.copy_csv(panddas_path)
@@ -407,7 +407,7 @@ def main():
                     continue
                 input_dirs.append(input.get('dir'))
                 soakdbfiles.append(input.get('soakdb', 'processing/database/soakDBDataFile.sqlite'))
-                panddas_files.append(input.get(utils.Constants.META_BINDING_EVENT, []))
+                panddas_files.append(input.get(utils.Constants.CONFIG_PANDDAS_EVENT_FILES, []))
 
         # check we have at least one input
         if len(input_dirs) == 0: