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tweak to user guide
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tdudgeon committed Dec 4, 2024
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Expand Up @@ -195,8 +195,6 @@ inputs: # The datasources to collate
type: manual # each downloaded pdb file (cif!) and corresponding .mtz file are put in this dir.
```
You will need to create the directory you specified in `output_dir`, i.e. `output/xchemalign`.

Note that the `extra_files_dir`, `soakdb`, `exclude` and `panddas_missing_ok` items are optional, either
having sensible default values or not necessarily needing values.

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