fixup

zavolanlab · Jan 31, 2024 · 1602906 · 1602906
1 parent e1df3de
commit 1602906
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/zarp/plugins/sample_processors/htsinfer.py b/zarp/plugins/sample_processors/htsinfer.py
@@ -64,7 +64,7 @@ def process(  # pylint: disable=arguments-differ
         LOGGER.debug(f"Command: {cmd}")
         executor.run(cmd=cmd)
         records_new = stp.read(
-            path=content.samples_out,
+            path=Path(content.samples_out),
             mapping=map_zarp_to_model,
         )
         return records_new