Matlab App for Off-Axis Digital Holographic Microscopy phase retrieval. The program is intented to work for all off-axis DHM images. It also has a recording setup for the FLIR Blackfly S camera.
MATLAB R2019b preferred.
For imaging using FLIR Blackfly S, MATLAB R2019b is required, with FLIR Spinnaker support installed.
For processing, MATLAB R2019a and above is required.
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Make sure the following add-ons have been installed into your Matlab installation:
a. Image Processing Toolbox b. Parallel Computing Toolbox c. Signals Processing Toolbox d. Curve Fitting Toolbox
Help on how to install add-ons can be found here
- Download latest version of "mlappinstall" file from Releases
- Run installer
- In Matlab, open Apps tab, expand app list and click on DHM with Blackfly S.
For details on how to use the program, please click on the Wiki.
If a CUDA supported Nvidia GPU is available, the program will automatically use the GPU where appropriate.
CUDA can be installed via the the Nvidia site.
Please submit all bugs and feature requests via the Issues page, and attach screenshots where possible.
For further usage details, please visit the Wiki or our SPIE conference proceeding
If you have found this program to be useful in your research, we would be grateful if you could cite us using:
Tienan Xu, Xuefei He, Zhiduo Zhang, Samantha Montague, Elizabeth Gardiner, and Woie Ming Lee "Software package for off-axis digital holographic microscopy imaging processing", Proc. SPIE 11202, Biophotonics Australasia 2019, 112021C (30 December 2019); https://doi.org/10.1117/12.2539541