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Releases: RobinVanSchendel/SIQ

SIQ 1.8

18 Jul 10:28
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The latest SIQ release v1.8 let's you detect mutations in long-read sequence data such as ONT and PacBio data.

Large changes

  • SIQ now support ONT analysis. Be sure to check the "Enable long-read analysis (PacBio/ONT)". All read files are assumed to contain long reads then. Note: For this option to work optimally it is currently advised NOT to include your primer sequences
  • PacBio data was already supported previously and is detected automatically by read names ending with "ccs" in the FASTQ files. This detection is still performed even if "Enable long-read analysis (PacBio/ONT)" is disabled. This behaviour may be changed in the future
  • events that contain a Deletion + Insertion are automatically filtered out if at least 11 bp of the insertion can be found back in the deletion. These events are likely the result of a Deletion + SNV or at least a compound event. This filter is on by default, but can be disabled. SIQPlotteR will also plot these events now as DELINS_SNV.

Small fixes:

  • Apple Command button now also works for copy & paste

v1.3

01 Aug 19:06
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fixes a critical issue that checks ability to write in the current directory.

Also allows for running SIQ from the command line. Check

java -jar SIQ_1.3.jar --help

for input options

v1.1

07 Feb 08:46
2b9fbf3
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SIQ 1.1 is now ready. This release includes:

  • attempt to automatically install flash. Please create an issue if this fails.
  • example data can be directly loaded via the 'load example data' button in the user interface. Note that these are ony partial datasets (max 25,000 reads). Some entries with R1 and R2 require merging. If this fails there is likely a problem with flash. Please see the previous note and report the issue

First official release of SIQ

21 Dec 14:56
417e945
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SIQ is currently production ready