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SIQ 1.8

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@RobinVanSchendel RobinVanSchendel released this 18 Jul 10:28
· 33 commits to master since this release
v1.8
d0b169a

The latest SIQ release v1.8 let's you detect mutations in long-read sequence data such as ONT and PacBio data.

Large changes

  • SIQ now support ONT analysis. Be sure to check the "Enable long-read analysis (PacBio/ONT)". All read files are assumed to contain long reads then. Note: For this option to work optimally it is currently advised NOT to include your primer sequences
  • PacBio data was already supported previously and is detected automatically by read names ending with "ccs" in the FASTQ files. This detection is still performed even if "Enable long-read analysis (PacBio/ONT)" is disabled. This behaviour may be changed in the future
  • events that contain a Deletion + Insertion are automatically filtered out if at least 11 bp of the insertion can be found back in the deletion. These events are likely the result of a Deletion + SNV or at least a compound event. This filter is on by default, but can be disabled. SIQPlotteR will also plot these events now as DELINS_SNV.

Small fixes:

  • Apple Command button now also works for copy & paste
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