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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,398 @@ | ||
| { | ||
| "header": { | ||
| "name": "Model", | ||
| "schema": "https://raw.githubusercontent.com/DARPA-ASKEM/Model-Representations/petrinet_v0.6/petrinet/petrinet_schema.json", | ||
| "schema_name": "petrinet", | ||
| "description": "Model", | ||
| "model_version": "0.1" | ||
| }, | ||
| "properties": {}, | ||
| "model": { | ||
| "states": [ | ||
| { | ||
| "id": "S_m", | ||
| "name": "S_m", | ||
| "grounding": { | ||
| "identifiers": { | ||
| "ido": "0000514" | ||
| }, | ||
| "modifiers": { | ||
| "species": "ncbitaxon:9606", | ||
| "sex": "m" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "id": "I_m", | ||
| "name": "I_m", | ||
| "grounding": { | ||
| "identifiers": { | ||
| "ido": "0000511" | ||
| }, | ||
| "modifiers": { | ||
| "species": "ncbitaxon:9606", | ||
| "sex": "m" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "id": "E_m", | ||
| "name": "E_m", | ||
| "grounding": { | ||
| "identifiers": { | ||
| "apollosv": "00000154" | ||
| }, | ||
| "modifiers": { | ||
| "species": "ncbitaxon:9606", | ||
| "sex": "m" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "id": "I_w", | ||
| "name": "I_w", | ||
| "grounding": { | ||
| "identifiers": { | ||
| "ido": "0000511" | ||
| }, | ||
| "modifiers": { | ||
| "species": "ncbitaxon:9606", | ||
| "sex": "w" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "id": "S_w", | ||
| "name": "S_w", | ||
| "grounding": { | ||
| "identifiers": { | ||
| "ido": "0000514" | ||
| }, | ||
| "modifiers": { | ||
| "species": "ncbitaxon:9606", | ||
| "sex": "w" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "id": "E_w", | ||
| "name": "E_w", | ||
| "grounding": { | ||
| "identifiers": { | ||
| "apollosv": "00000154" | ||
| }, | ||
| "modifiers": { | ||
| "species": "ncbitaxon:9606", | ||
| "sex": "w" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "id": "R_m", | ||
| "name": "R_m", | ||
| "grounding": { | ||
| "identifiers": { | ||
| "ido": "0000592" | ||
| }, | ||
| "modifiers": { | ||
| "species": "ncbitaxon:9606", | ||
| "sex": "m" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "id": "R_w", | ||
| "name": "R_w", | ||
| "grounding": { | ||
| "identifiers": { | ||
| "ido": "0000592" | ||
| }, | ||
| "modifiers": { | ||
| "species": "ncbitaxon:9606", | ||
| "sex": "w" | ||
| } | ||
| } | ||
| } | ||
| ], | ||
| "transitions": [ | ||
| { | ||
| "id": "t_m_m", | ||
| "input": [ | ||
| "I_m", | ||
| "S_m" | ||
| ], | ||
| "output": [ | ||
| "I_m", | ||
| "E_m" | ||
| ], | ||
| "properties": { | ||
| "name": "t_m_m" | ||
| } | ||
| }, | ||
| { | ||
| "id": "t_m_w", | ||
| "input": [ | ||
| "I_w", | ||
| "S_m" | ||
| ], | ||
| "output": [ | ||
| "I_w", | ||
| "E_m" | ||
| ], | ||
| "properties": { | ||
| "name": "t_m_w" | ||
| } | ||
| }, | ||
| { | ||
| "id": "t_w_m", | ||
| "input": [ | ||
| "I_m", | ||
| "S_w" | ||
| ], | ||
| "output": [ | ||
| "I_m", | ||
| "E_w" | ||
| ], | ||
| "properties": { | ||
| "name": "t_w_m" | ||
| } | ||
| }, | ||
| { | ||
| "id": "t_w_w", | ||
| "input": [ | ||
| "I_w", | ||
| "S_w" | ||
| ], | ||
| "output": [ | ||
| "I_w", | ||
| "E_w" | ||
| ], | ||
| "properties": { | ||
| "name": "t_w_w" | ||
| } | ||
| }, | ||
| { | ||
| "id": "t_m", | ||
| "input": [ | ||
| "E_m" | ||
| ], | ||
| "output": [ | ||
| "I_m" | ||
| ], | ||
| "properties": { | ||
| "name": "t_m" | ||
| } | ||
| }, | ||
| { | ||
| "id": "t_w", | ||
| "input": [ | ||
| "E_w" | ||
| ], | ||
| "output": [ | ||
| "I_w" | ||
| ], | ||
| "properties": { | ||
| "name": "t_w" | ||
| } | ||
| }, | ||
| { | ||
| "id": "t_m", | ||
| "input": [ | ||
| "I_m" | ||
| ], | ||
| "output": [ | ||
| "R_m" | ||
| ], | ||
| "properties": { | ||
| "name": "t_m" | ||
| } | ||
| }, | ||
| { | ||
| "id": "t_w", | ||
| "input": [ | ||
| "I_w" | ||
| ], | ||
| "output": [ | ||
| "R_w" | ||
| ], | ||
| "properties": { | ||
| "name": "t_w" | ||
| } | ||
| } | ||
| ] | ||
| }, | ||
| "semantics": { | ||
| "ode": { | ||
| "rates": [ | ||
| { | ||
| "target": "t_m_m", | ||
| "expression": "I_m*S_m*alpha_se_m_m*beta_m_m/N_m_m", | ||
| "expression_mathml": "<apply><divide/><apply><times/><ci>I_m</ci><ci>S_m</ci><ci>alpha_se_m_m</ci><ci>beta_m_m</ci></apply><ci>N_m_m</ci></apply>" | ||
| }, | ||
| { | ||
| "target": "t_m_w", | ||
| "expression": "I_w*S_m*alpha_se_m_w*beta_m_w/N_m_w", | ||
| "expression_mathml": "<apply><divide/><apply><times/><ci>I_w</ci><ci>S_m</ci><ci>alpha_se_m_w</ci><ci>beta_m_w</ci></apply><ci>N_m_w</ci></apply>" | ||
| }, | ||
| { | ||
| "target": "t_w_m", | ||
| "expression": "I_m*S_w*alpha_se_w_m*beta_w_m/N_w_m", | ||
| "expression_mathml": "<apply><divide/><apply><times/><ci>I_m</ci><ci>S_w</ci><ci>alpha_se_w_m</ci><ci>beta_w_m</ci></apply><ci>N_w_m</ci></apply>" | ||
| }, | ||
| { | ||
| "target": "t_w_w", | ||
| "expression": "I_w*S_w*alpha_se_w_w*beta_w_w/N_w_w", | ||
| "expression_mathml": "<apply><divide/><apply><times/><ci>I_w</ci><ci>S_w</ci><ci>alpha_se_w_w</ci><ci>beta_w_w</ci></apply><ci>N_w_w</ci></apply>" | ||
| }, | ||
| { | ||
| "target": "t_m", | ||
| "expression": "E_m*alpha_ei_m", | ||
| "expression_mathml": "<apply><times/><ci>E_m</ci><ci>alpha_ei_m</ci></apply>" | ||
| }, | ||
| { | ||
| "target": "t_w", | ||
| "expression": "E_w*alpha_ei_w", | ||
| "expression_mathml": "<apply><times/><ci>E_w</ci><ci>alpha_ei_w</ci></apply>" | ||
| }, | ||
| { | ||
| "target": "t_m", | ||
| "expression": "I_m*tau_m", | ||
| "expression_mathml": "<apply><times/><ci>I_m</ci><ci>tau_m</ci></apply>" | ||
| }, | ||
| { | ||
| "target": "t_w", | ||
| "expression": "I_w*tau_w", | ||
| "expression_mathml": "<apply><times/><ci>I_w</ci><ci>tau_w</ci></apply>" | ||
| } | ||
| ], | ||
| "initials": [ | ||
| { | ||
| "target": "S_m", | ||
| "expression": "96862471.78", | ||
| "expression_mathml": "<cn>96862471.780000001</cn>" | ||
| }, | ||
| { | ||
| "target": "I_m", | ||
| "expression": "28.22", | ||
| "expression_mathml": "<cn>28.219999999999999</cn>" | ||
| }, | ||
| { | ||
| "target": "E_m", | ||
| "expression": "0", | ||
| "expression_mathml": "<cn>0</cn>" | ||
| }, | ||
| { | ||
| "target": "I_w", | ||
| "expression": "27.0", | ||
| "expression_mathml": "<cn>27.0</cn>" | ||
| }, | ||
| { | ||
| "target": "S_w", | ||
| "expression": "96862473.0", | ||
| "expression_mathml": "<cn>96862473.0</cn>" | ||
| }, | ||
| { | ||
| "target": "E_w", | ||
| "expression": "0", | ||
| "expression_mathml": "<cn>0</cn>" | ||
| }, | ||
| { | ||
| "target": "R_m", | ||
| "expression": "0", | ||
| "expression_mathml": "<cn>0</cn>" | ||
| }, | ||
| { | ||
| "target": "R_w", | ||
| "expression": "0", | ||
| "expression_mathml": "<cn>0</cn>" | ||
| } | ||
| ], | ||
| "parameters": [ | ||
| { | ||
| "id": "alpha_ei_m", | ||
| "value": 0.11764705882352941 | ||
| }, | ||
| { | ||
| "id": "alpha_ei_w", | ||
| "value": 0.045454545454545456 | ||
| }, | ||
| { | ||
| "id": "N_m_m", | ||
| "value": 96862500.0 | ||
| }, | ||
| { | ||
| "id": "alpha_se_m_m", | ||
| "value": 1 | ||
| }, | ||
| { | ||
| "id": "beta_m_m", | ||
| "value": 0.34 | ||
| }, | ||
| { | ||
| "id": "N_m_w", | ||
| "value": 96862500.0 | ||
| }, | ||
| { | ||
| "id": "alpha_se_m_w", | ||
| "value": 0.1 | ||
| }, | ||
| { | ||
| "id": "beta_m_w", | ||
| "value": 0.01 | ||
| }, | ||
| { | ||
| "id": "N_w_m", | ||
| "value": 96862500.0 | ||
| }, | ||
| { | ||
| "id": "alpha_se_w_m", | ||
| "value": 0.01 | ||
| }, | ||
| { | ||
| "id": "beta_w_m", | ||
| "value": 0.19 | ||
| }, | ||
| { | ||
| "id": "N_w_w", | ||
| "value": 96862500.0 | ||
| }, | ||
| { | ||
| "id": "alpha_se_w_w", | ||
| "value": 0.5 | ||
| }, | ||
| { | ||
| "id": "beta_w_w", | ||
| "value": 0.2 | ||
| }, | ||
| { | ||
| "id": "tau_m", | ||
| "value": 0.125 | ||
| }, | ||
| { | ||
| "id": "tau_w", | ||
| "value": 0.14285714285714285 | ||
| } | ||
| ], | ||
| "observables": [ | ||
| { | ||
| "id": "cases_m", | ||
| "name": "cases_m", | ||
| "expression": "E_m*alpha_ei_m", | ||
| "expression_mathml": "<apply><times/><ci>E_m</ci><ci>alpha_ei_m</ci></apply>" | ||
| }, | ||
| { | ||
| "id": "cases_w", | ||
| "name": "cases_w", | ||
| "expression": "E_w*alpha_ei_w", | ||
| "expression_mathml": "<apply><times/><ci>E_w</ci><ci>alpha_ei_w</ci></apply>" | ||
| } | ||
| ], | ||
| "time": { | ||
| "id": "t" | ||
| } | ||
| } | ||
| }, | ||
| "metadata": { | ||
| "annotations": {} | ||
| } | ||
| } |