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27 import mop directly#44

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StroemPhi wants to merge 77 commits intorsc-ontologies:masterrsc-ontologies/rxno:masterfrom NFDI4Chem:27_importMOP_directlyNFDI4Chem/rxno:27_importMOP_directlyCopy head branch name to clipboard

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Commits on Apr 7, 2022

• rsc-ontologies#27 compare MOP entities

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• rsc-ontologies#27 add MOPvsRXNO as excel and suggest solution for MOP:0000003

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• correct the axioms needed to also have "acylation" as inferred parent of "univalent carboacylation"

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• rsc-ontologies#27 reconcile: MOP:0000339, MOP:0000364, MOP:0000369, MOP:0000410, MOP:0000411

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• rsc-ontologies#27 reconciling: MOP:0000422, MOP:0000458, MOP:0000479, MOP:0000539

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• reconcile classes

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• rsc-ontologies#27 reconcile: MOP:0000566, MOP:0000567, MOP:0000568

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Commits on Apr 19, 2022

• reconcile: MOP:0000569, MOP:0000570, MOP:0000571,

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• rsc-ontologies#27 reconcile: MOP:0000582, MOP:0000583,

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• rsc-ontologies#27 propose how to classify 'alkene oxidative cleavage' for now

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Commits on Apr 20, 2022

• rsc-ontologies#27 reconcile: MOP:0000589, MOP:0000596, MOP:0000618, ...

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• rsc-ontologies#27 reconcile last batch in XLSX

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Commits on Apr 21, 2022

• rsc-ontologies#27 adding comment in xlsx regarding acylation superclass

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• rsc-ontologies#27 import MOP into RXNO

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• rsc-ontologies#27 delete MOP_0000003 (formylation) from rxno.owl and correct its superclass subsumption in MOP

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• Revert "rsc-ontologies#27 import MOP into RXNO"

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• Revert "rsc-ontologies#27 delete MOP_0000003 (formylation) from rxno.owl and correct its superclass subsumption in MOP"

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• rsc-ontologies#27 add editor files

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• rename editor files

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• delete MOP_0000339 silylation from rxno_edit.owl

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• delete MOP_0000364 methylation from rxno-edit.owl

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• delete MOP_0000369 alkylation from rxno-edit.owl

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• delete MOP_0000410 hydrocarbylation from rxno-edit.owl

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• delete MOP_0000411 arylation from rxno-edit.owl but add its additional subclass axiom to mop-edit.owl

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• delete MOP_0000422 allylation in rxno-edit.owl

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• delete MOP_0000458 organylation from rxno-edit.owl

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• delete MOP_0000479 acylation from rxno-edit.owl

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• delete MOP_0000539 sulfonylation from rxno-edit.owl but copy comment to MOP

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• delete MOP_0000543, MOP:0000555, MOP:0000562, MOP:0000563, MOP:0000564 from rxno-edit.owl

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• delete identical MOP classes from rxno-edit.owl

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• delete more identical MOP classes from rxno.edit

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• cut MOP classes only declared in rxno-edit.owl to mop-edit.owl

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• Update MOP_vs_RXNO.xlsx

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• delete MOP:0000550 halogenation in rxno-edit.owl

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• clean up after copying classes from RXNO to MOP and adding of needed CHEBI terms

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• delete MOP_0000556 nitration from rxno-edit.owl

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• fix exidently deleted metadata of nitration

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• delete cyclization from RXNO and use its has_participant axiom instead of the MOP one

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• delete MOP:0000571 from rxno but copy missing axioms to mop

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• delete MOP_0000565 from rxno but copy axiom to mop

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• delete MOP_0000572 from rxno but copy axiom to mop

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• delete MOP_0000573 from rxno but copy missing axioms to mop

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• delete MOP_0000574 from rxno but copy missing axioms and altLabel to mop

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• delete MOP_0000575 from rxno but change its parent in mop

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• delete MOP_0000556 in rxno, as parent in mop is more precise

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• delete MOP_0000577 in rxno but copy axiom to mop

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• delete MOP_0000578 from rxno but copy axiom to mop

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• delete deprecated MOP_0000524 from rxno as it's already in mop

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• delete MOP_0000579 from rxno but copy axiom to mop

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• delete MOP_0000580 from RXNO but copy axioms to MOP

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• delete MOP_0002411 from rxno

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• add IAO AP labels

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• merge MOP:0000708 and RXNO:0000344 and make the latter obsolete

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• make secondary and primary alcohol children of alcohol

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• delete wrong injected disjoint axiom

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Commits on May 5, 2022

• minted MOP:ID for "oxidation state" which was falsely using MOP:0000716 in RXNO

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• move rsc-ontologies#27 workfiles into docs

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• Create catalog-v001.xml

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Commits on May 10, 2022

• resolve conflict between MOP:0000591 & MOP:0000713 in RXNO

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• move "carbonyl oxidation to alkyne" to MOP properly

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• move "[3+2] cycloaddition" to MOP

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• add iao:ICE as parent for "'oxidation state'" (MOP:0005561)

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• move deprecated RXNO classes from MOP to RXNO

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• delete MOP_0000627 in RXNO

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• delete MOP_0000628 from RXNO

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Commits on May 11, 2022

• delete MOP_0000671 from RXNO but "cyclization" (MOP_0000561) as parent in MOP

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• delete enolisation (with wrong ID) in RXNO but

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• add header to mop_vs_rxno.tsv

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• Merge branch '27_importMOP_directly' of https://github.com/NFDI4Chem/rxno into 27_importMOP_directly

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Commits on May 12, 2022

• Update MOP_vs_RXNO.xlsx

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Commits on May 19, 2022

• Merge pull request #21 from rsc-ontologies/master

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• delete parent MOP_0000800 from MOP_0000028

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• revert MOP_0000479 (acylation) being child and instead sibling of MOP_0000458 (organylation)

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• don't use axiomatization proposed in rsc-ontologies#27 on "oxidative cleavage" and alkene oxidative cleavage

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• keep longer labels from the previous RXNO duplicates

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• fix wrong namespace annotation

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• update Protégé formatation

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