Code

Hip otherinputs#283

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semaphoreP merged 119 commits intomainsblunt/orbitize:mainfrom hip-otherinputssblunt/orbitize:hip-otherinputsCopy head branch name to clipboardOct 13, 2021

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Commits

Commits on Sep 16, 2019

• inital commit of openCL implementation

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• Somewhat working implementation of newtonian solver using pyopencl

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Commits on Sep 17, 2019

• (#138): Working OpenCL solver with ~6x speedup over python implementation

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Commits on Sep 22, 2019

• use opencl only if everything was setup properly

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• First commit of pycuda, working with ~5x speedup

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• (#138): Adding *.cu file this time

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Commits on Sep 23, 2019

• (#138): Defaults to gpu off, allocates gpu memory late

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• (#138): Renaming modules and variables

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• (#138): CUDA Mikkola Solver now works

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Commits on Oct 6, 2019

• (#138): Added default options at class level

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Commits on Jan 25, 2021

• Merge branch 'main' into pycuda

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Commits on Apr 2, 2021

• Updating Driver to accept stellar_mass instead of system_mass for consistency with Sampler.

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• Updated tutorials to reflect stellar_mass instead of system_mass terminology

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Commits on May 28, 2021

• Changed stellar_mass to stellar_or_system_mass

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Commits on Jul 21, 2021

• small updates to mstar vs mtot

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• merge with Mireya changes

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Commits on Sep 3, 2021

• Merge branch 'develop' into pycuda

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• Merge branch 'develop' into pycuda

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Commits on Sep 16, 2021

• playing around with other input formats for IAD

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Commits on Sep 21, 2021

• first draft

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• small changes to todo comments

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• now with correct math

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• now even with correct edr3 epoch!

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• now with working code!

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Commits on Sep 23, 2021

• fixed some unit errors discovered with end-to-end bpic test

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Commits on Sep 26, 2021

• asymptotically approaching reproducing eric's fit

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• add dr2/dr3 option

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Commits on Sep 27, 2021

• update hipparcos attribution

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• hipparcos module now handles 2021 re-reduction (which rejects scans) and DVD files

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• remove .rr_headers in gitignore

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• Merge branch 'hip-otherinputs' into gaia-module

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• formatting changelog in index docs

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• update todo list

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• adding the snellan RV to the beta pic end-to-end

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• update beta pic test description

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• calculate absolute rather than relative log-likelihood

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• alpha0 -> alpha0* in corner plot label

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• cite gaia appropriately

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• add gaia to hipparcos tutorial

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• documenting gaia module more carefully

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Commits on Sep 28, 2021

• undo absolute lnlike for gaia and hip

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• add all unit tests for gaia

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• Merge branch 'main' into mtot_mstar_consistency

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Commits on Sep 29, 2021

• api draft

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• Merge branch 'main' into plotting-api [skip-ci]

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• tests passing [skip-ci]

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• some pep8 cleanup

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• hipparcos/gaia save/load tests passing

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• updated docstrings for all major modules

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Commits on Oct 3, 2021

• only running gpu tests when a gpu environment is detected

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• Merge branch 'main' of github.com:sblunt/orbitize into pycuda

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• Move gpu variables/functions to gpu context class which manages interactions with the gpu

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• reorganizing code, adding newton wrapper

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• moving profiling code to its own function, printing summaries instead of pstat output

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• only import gpu_context if pycuda is installed properly

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• removing python2.7, pedagogical fluff

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• Adding info about WSL and windows-curses

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• spelling

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• removing opencl files

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• Docstrings, readability things, obeying pep8

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• more formatting, docstring updates

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Commits on Oct 4, 2021

• Changed basis.param_idx statements to basis.standard_basis.idx to grab the correct converted indices. Changes not yet made for results.

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Commits on Oct 5, 2021

• add some unit tests and docs notes for secondary RVs

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• prettifying docs html display

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• add contributing page to main index

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Commits on Oct 6, 2021

• added detail and example of fixing priors

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• more small html changes

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• and some more html changes

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Commits on Oct 7, 2021

• Merge branch 'plotting-api' into pycuda

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• Merge pull request #203 from sblunt/pycuda

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• Fixed results and plotting with the new basis. Will need to add tests for this.

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• Merge branch 'main' into mtot_mstar_consistency

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• Merge remote-tracking branch 'origin/plotting-api' into mtot_mstar_consistency

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• fixed bug with MCMC version save/load with chopping chains

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• fix m1 unit display on corner plot

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• Merge remote-tracking branch 'origin/docs-facelift' into mtot_mstar_consistency

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• fixed a bug plotting data for multibody fits

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Commits on Oct 8, 2021

• bugfixes for orbit plot with no RV inst names

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• all notebooks running except changing bases

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• Merge branch 'mtot_mstar_consistency' into basis_fix

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• save input_table rather than data_table so reloading works properly; changing basis tutorial working now

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• minor changes

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• fix import error

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• stellar_mass -> stellar_or_system_mass

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• missed one

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• make test_driver tests pass

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• make test_basis_with_system tests pass

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• fix multi-inst rv plotting

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• well now I did

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• fixed mcmc tests; all tests pass now on my machine

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• rerun all tutorials

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Commits on Oct 11, 2021

• Hip measurements are relative to 1991.25, so need to subtract orbit model at that epoch

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• cleanup

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• fix one sphere point re: mirek brandt

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Commits on Oct 12, 2021

• remove debugging test from hipparcos.py

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• add note about not fitting pm in gaia module

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• Merge branch 'plotting-api' into docs-facelift

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• Merge branch 'docs-facelift' into mtot_mstar_consistency

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• add some more detail for windows install intructions

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• add some more detail for windows install instructions

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• formatting fix

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• add tutorial section captions

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• added captions but didn't seem to change display

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Commits on Oct 13, 2021

• Merge branch 'docs-facelift' into mtot_mstar_consistency

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• Merge pull request #299 from sblunt/amend-windows-install-instructions

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• Merge pull request #297 from sblunt/hipparcos-calculation-bugfix

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• Merge pull request #293 from sblunt/add-pl-rv-unit-tests

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• Merge branch 'mtot_mstar_consistency' into basis_fix

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• Merge pull request #296 from sblunt/basis_fix

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• Merge pull request #294 from sblunt/docs-facelift

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• Merge pull request #286 from sblunt/mtot_mstar_consistency

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• Merge branch 'gaia-module' into plotting-api

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• Merge pull request #287 from sblunt/plotting-api

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• Merge pull request #285 from sblunt/gaia-module

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• rerun tutorial nbs

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• re-run tutorial nbs

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• use overwritable globbal variables instead of keywords to use c or gpu kepler solvers

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• fixing profiling tests

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• Merge pull request #300 from sblunt/cuda-c-api-cleanup

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