get_extent() refactoring (#318)

Co-authored-by: Sonja Stockhaus <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Tim Treis <[email protected]>
scverse · Oct 10, 2023 · cf925c5 · cf925c5
1 parent 14bf585
commit cf925c5
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Showing 14 changed files with 790 additions and 92 deletions.
diff --git a/docs/api.md b/docs/api.md
@@ -26,6 +26,7 @@ Operations on `SpatialData` objects.
     bounding_box_query
     polygon_query
     get_values
+    get_extent
     match_table_to_element
     concatenate
     rasterize

diff --git a/pyproject.toml b/pyproject.toml
@@ -40,6 +40,7 @@ dependencies = [
     "networkx",
     "xarray-spatial>=0.3.5",
     "tqdm",
+    "fsspec<=2023.6",
 ]
 
 [project.optional-dependencies]

diff --git a/src/spatialdata/__init__.py b/src/spatialdata/__init__.py
@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 from importlib.metadata import version
 
 __version__ = version("spatialdata")
@@ -22,16 +24,19 @@
     "get_values",
     "match_table_to_element",
     "SpatialData",
+    "get_extent",
     "read_zarr",
     "unpad_raster",
     "save_transformations",
 ]
 
 from spatialdata import dataloader, models, transformations
 from spatialdata._core.concatenate import concatenate
+from spatialdata._core.data_extent import get_extent
 from spatialdata._core.operations.aggregate import aggregate
 from spatialdata._core.operations.rasterize import rasterize
 from spatialdata._core.operations.transform import transform
+from spatialdata._core.query._utils import circles_to_polygons, get_bounding_box_corners
 from spatialdata._core.query.relational_query import get_values, match_table_to_element
 from spatialdata._core.query.spatial_query import bounding_box_query, polygon_query
 from spatialdata._core.spatialdata import SpatialData