Remove all references to central store

utils/lcogt_uphot.pro

@@ -67,7 +67,6 @@ function get_counts,star,calimage,catfile,exptime_cal,airmass_cal
   if sxpar(hdr,'WCSERR') ne 0 then begin
 
      ;;borrow an image with good WCS
-     datadir='/astro/ullyses/lcogt_data/'
      case star of
         'V* BP Tau': good=datadir+'V-BP-TAU-CAL/ogg0m406-kb27-20210909-0216-e91.fits.fz'
         'V* GM Aur': good=datadir+'V-GM-AUR-CAL/ogg0m404-kb82-20211010-0250-e91.fits.fz'
@@ -285,7 +284,7 @@ function photometry,target,image,calimage,catfile,filter,targ_ra,targ_dec,f0,PLO
 
 end
 
-pro lcogt_uphot,imagedir,target,PLOT=plot
+pro lcogt_uphot,imagedir,target,PLOT=plot,datadir
 
   ;;uncomment when debugging to close any output files
   close,/all

utils/make_alias_file.py

@@ -183,83 +183,6 @@ def fix_pipes(all_aliases):
 
     return all_aliases
 
-# NOT IN USE
-def create_fuse_alias2():
-# NOT IN USE
-    fuse_targs0 = glob.glob("/astro/ullyses/ullyses_target/data/SMC/FUSE/*") + \
-                  glob.glob("/astro/ullyses/ullyses_target/data/LMC/FUSE/*") + \
-                  glob.glob("/astro/ullyses/ullyses_target/data/SMC_FUSE/FUSE/*") + \
-                  glob.glob("/astro/ullyses/ullyses_target/data/LMC_FUSE/FUSE/*")
-    fuse_targs = [os.path.basename(x) for x in fuse_targs0]
-    fuse_targs_upper = [x.upper() for x in fuse_targs]
-
-    fuse_dicts = []
-    for i in range(len(fuse_targs0)):
-        fuse_d = {}
-        fuse_d["dirname"] = fuse_targs_upper[i]
-
-        partial_d = fuse_targs0[i]
-        partial_d = partial_d.replace("[", "LEFTBRACKET")
-        partial_d = partial_d.replace("]", "RIGHTBRACKET")
-        partial_d = partial_d.replace("LEFTBRACKET", "[[]")
-        partial_d = partial_d.replace("RIGHTBRACKET", "[]]")
-        files = glob.glob(os.path.join(partial_d, "*", "*.fit*"))
-        targnames0 = [fits.getval(x, "targname") for x in files]
-        targnames = list(set(targnames0))
-        for j in range(len(targnames)):
-            fuse_d[f"targname{j}"] = targnames[j]
-        fuse_dicts.append(fuse_d)
-
-    df = pd.DataFrame(fuse_dicts)
-    df = clean_df(df)
-    df.to_json("data/target_metadata/fuse_target_aliases.json", orient="split")
-    print("Wrote data/target_metadata/fuse_target_aliases.json")
-
-
-# manual_insert.json includes manually matched FUSE names to ULLYSES names.
-# This only needs to be run once and never again.
-def create_fuse_alias(infile="data/target_metadata/manual_insert.json"):
-    fuse_targs0 = glob.glob("/astro/ullyses/ullyses_target/data/SMC/FUSE/*") + \
-                  glob.glob("/astro/ullyses/ullyses_target/data/LMC/FUSE/*") + \
-                  glob.glob("/astro/ullyses/ullyses_target/data/SMC_FUSE/FUSE/*") + \
-                  glob.glob("/astro/ullyses/ullyses_target/data/LMC_FUSE/FUSE/*")
-    fuse_targs = [os.path.basename(x) for x in fuse_targs0]
-    fuse_targs_upper = [x.upper() for x in fuse_targs]
-
-    df = pd.read_json(infile, orient="split")
-    for i in range(len(df)):
-        fuse_targ = df.loc[i, "alias0"]
-        fuse_targ = fuse_targ.upper()
-
-        inds = [j for j in range(len(fuse_targs_upper)) if fuse_targs_upper[j] == fuse_targ]
-        toadd = []
-        for ind in inds:
-            d = fuse_targs0[ind]
-            d = d.replace("[", "LEFTBRACKET")
-            d = d.replace("]", "RIGHTBRACKET")
-            d = d.replace("LEFTBRACKET", "[[]")
-            d = d.replace("RIGHTBRACKET", "[]]")
-            files = glob.glob(os.path.join(d, "*", "*.fit*"))
-            toadd0 = [fits.getval(x, "targname") for x in files]
-            toadd += list(set(toadd0))
-
-        toadd = list(set(toadd))
-
-        emptycols = df.columns[df.iloc[i].isna()].tolist()
-        if len(toadd) > len(emptycols):
-            for comparisoncol in range(len(toadd)-len(emptycols)):
-                aliasno = len(df.columns)-1
-                df[f"alias{aliasno}"] = np.nan
-            emptycols = df.columns[df.iloc[i].isna()].tolist()
-        for j in range(len(toadd)):
-            df.loc[i,emptycols[j]] = toadd[j]
-
-
-
-    df = clean_df(df)
-    df.to_json(FUSEFILE1, orient="split")
-    print(f"Wrote {FUSEFILE1}")
-
 
 def remove_withdrawn(df):
     # Sometimes rows with target=WITHDRAWN get in the aliases DF. Remove them.