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Hourly export update
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actions-user committed Jan 14, 2025
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10 changes: 5 additions & 5 deletions bugsigdb_signatures_genus_metaphlan.gmt
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10 changes: 5 additions & 5 deletions bugsigdb_signatures_genus_metaphlan_exact.gmt
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10 changes: 5 additions & 5 deletions bugsigdb_signatures_genus_ncbi.gmt
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# BugSigDB 2025-01-14_13:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-14_14:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 2759736 1386
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 2759736
Expand Down Expand Up @@ -4580,10 +4580,10 @@ bsdb:1086/11/1_Phenylketonuria:Control-Children-Subgingival-plaque-(Ctrl-Ch-SP)-
bsdb:1086/11/2_Phenylketonuria:Control-Children-Subgingival-plaque-(Ctrl-Ch-SP)-patients_vs_Control-Children-Saliva-(Ctrl-Ch-S)-patients_DOWN NA 2801844 194 1016 2717 1716 848 195950 970 416916
bsdb:1086/12/1_Phenylketonuria:Phenylketonuria-Subgingival-plaque-(PKU-SP)-patients_vs_Phenylketonuria-Saliva-(PKU-S)-patients_UP NA 1283313 1380 1378 724 1164882 482 265975 1257 836 838 508215 1213720 1301 29465
bsdb:1086/12/2_Phenylketonuria:Phenylketonuria-Subgingival-plaque-(PKU-SP)-patients_vs_Phenylketonuria-Saliva-(PKU-S)-patients_DOWN NA 1654 2801844 194 1016 2717 1716 1434006 848 32257 2740 970 195950 133925
bsdb:1086/13/1_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-SP)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_UP NA 838 508215 1164882 1283313 1380 1378 724 1213720 1301 29465
bsdb:1086/13/2_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-SP)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_DOWN NA 194 2740 133925 2717 1654 970 2801844 1434006 1716 848 1016
bsdb:1086/14/1_Phenylketonuria:Phenylketonuria-Ch-(PKU-SP)_vs_Phenylketonuria-Ch-(PKU-S)_UP NA 1283313 1380 1378 724 1164882 482 1257 836 838 1301 29465
bsdb:1086/14/2_Phenylketonuria:Phenylketonuria-Ch-(PKU-SP)_vs_Phenylketonuria-Ch-(PKU-S)_DOWN NA 194 195950 2740 133925 2717 1654 970 32257 1434006 1716 848 1016 2801844
bsdb:1086/13/1_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-S)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_UP NA 1283313 1380 1378 724 1164882 838 508215 1213720 1301 29465 1257 265975
bsdb:1086/13/2_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-S)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_DOWN NA 1654 2801844 194 1016 2717 1716 848 133925 970 195950
bsdb:1086/14/1_Phenylketonuria:Phenylketonuria-Children-subgingival-plaque-(PKU-Ch-SP)-patients_vs_Phenylketonuria-Children-Saliva-(PKU-Ch-S)-patients_UP NA 1283313 1380 1378 724 1164882 482 836 838 1301 29465 265975 508215
bsdb:1086/14/2_Phenylketonuria:Phenylketonuria-Children-subgingival-plaque-(PKU-Ch-SP)-patients_vs_Phenylketonuria-Children-Saliva-(PKU-Ch-S)-patients_DOWN NA 1654 2801844 194 1016 2717 1716 1434006 848 32257 133925 970 195950
bsdb:1087/1/4_Schizophrenia:SCZ:-individuals-with-a-psychiatric-diagnosis-of-schizophrenia_vs_control-individuals-without-a-psychiatric-diagnosis-(past-or-present)_UP NA 244127 572511 84111 561 644652 1649459
bsdb:1087/1/5_Schizophrenia:SCZ:-individuals-with-a-psychiatric-diagnosis-of-schizophrenia_vs_control-individuals-without-a-psychiatric-diagnosis-(past-or-present)_DOWN NA 1501226
bsdb:1087/3/1_Treatment-refractory-schizophrenia:TRS:-individuals-with-treatment-resistant-schizophrenia-taking-clozapine_vs_AAP:-individuals-with-treatment-responsive-schizophrenia-taking-atypical-antipsychotics-(not-clozapine)_UP NA 84111 1432051 1649459 1905344
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10 changes: 5 additions & 5 deletions bugsigdb_signatures_genus_ncbi_exact.gmt
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# BugSigDB 2025-01-14_13:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-14_14:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 1386
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244
Expand Down Expand Up @@ -3835,10 +3835,10 @@ bsdb:1086/11/1_Phenylketonuria:Control-Children-Subgingival-plaque-(Ctrl-Ch-SP)-
bsdb:1086/11/2_Phenylketonuria:Control-Children-Subgingival-plaque-(Ctrl-Ch-SP)-patients_vs_Control-Children-Saliva-(Ctrl-Ch-S)-patients_DOWN NA 2801844 194 1016 2717 1716 848 195950 970 416916
bsdb:1086/12/1_Phenylketonuria:Phenylketonuria-Subgingival-plaque-(PKU-SP)-patients_vs_Phenylketonuria-Saliva-(PKU-S)-patients_UP NA 1283313 1380 1378 724 1164882 482 265975 1257 836 838 508215 1213720 1301 29465
bsdb:1086/12/2_Phenylketonuria:Phenylketonuria-Subgingival-plaque-(PKU-SP)-patients_vs_Phenylketonuria-Saliva-(PKU-S)-patients_DOWN NA 1654 2801844 194 1016 2717 1716 1434006 848 32257 2740 970 195950 133925
bsdb:1086/13/1_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-SP)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_UP NA 838 508215 1164882 1283313 1380 1378 724 1213720 1301 29465
bsdb:1086/13/2_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-SP)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_DOWN NA 194 2740 133925 2717 1654 970 2801844 1434006 1716 848 1016
bsdb:1086/14/1_Phenylketonuria:Phenylketonuria-Ch-(PKU-SP)_vs_Phenylketonuria-Ch-(PKU-S)_UP NA 1283313 1380 1378 724 1164882 482 1257 836 838 1301 29465
bsdb:1086/14/2_Phenylketonuria:Phenylketonuria-Ch-(PKU-SP)_vs_Phenylketonuria-Ch-(PKU-S)_DOWN NA 194 195950 2740 133925 2717 1654 970 32257 1434006 1716 848 1016 2801844
bsdb:1086/13/1_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-S)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_UP NA 1283313 1380 1378 724 1164882 838 508215 1213720 1301 29465 1257 265975
bsdb:1086/13/2_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-S)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_DOWN NA 1654 2801844 194 1016 2717 1716 848 133925 970 195950
bsdb:1086/14/1_Phenylketonuria:Phenylketonuria-Children-subgingival-plaque-(PKU-Ch-SP)-patients_vs_Phenylketonuria-Children-Saliva-(PKU-Ch-S)-patients_UP NA 1283313 1380 1378 724 1164882 482 836 838 1301 29465 265975 508215
bsdb:1086/14/2_Phenylketonuria:Phenylketonuria-Children-subgingival-plaque-(PKU-Ch-SP)-patients_vs_Phenylketonuria-Children-Saliva-(PKU-Ch-S)-patients_DOWN NA 1654 2801844 194 1016 2717 1716 1434006 848 32257 133925 970 195950
bsdb:1088/1/1_Schizophrenia:SCZF:-patients-with-schizophrenia_vs_HCF:-healthy-controls-(no-psychiatric-diagnosis-of-schizophrenia)_UP NA 1654 1663 102106 106589 1730 88 13159 354349 286 113286 620
bsdb:1088/1/2_Schizophrenia:SCZF:-patients-with-schizophrenia_vs_HCF:-healthy-controls-(no-psychiatric-diagnosis-of-schizophrenia)_DOWN NA 447020 239759 92793 816 33042 1350 216851 724 1159323 119852 375288 838 46205 1263
bsdb:1088/2/1_Schizophrenia:SCZ:-schizophrenia-fecal-microbiota-recipient-mice_vs_HC:-healthy-control-fecal-microbiota-recipient-mice_UP NA 1716 209 283168 577309 1508657
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10 changes: 5 additions & 5 deletions bugsigdb_signatures_genus_taxname.gmt
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# BugSigDB 2025-01-14_13:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-14_14:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Lacticaseibacillus Bacillus
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes Lacticaseibacillus
Expand Down Expand Up @@ -4580,10 +4580,10 @@ bsdb:1086/11/1_Phenylketonuria:Control-Children-Subgingival-plaque-(Ctrl-Ch-SP)-
bsdb:1086/11/2_Phenylketonuria:Control-Children-Subgingival-plaque-(Ctrl-Ch-SP)-patients_vs_Control-Children-Saliva-(Ctrl-Ch-S)-patients_DOWN NA Arachnia Campylobacter Capnocytophaga Cardiobacterium Corynebacterium Fusobacterium Tannerella Selenomonas Aggregatibacter
bsdb:1086/12/1_Phenylketonuria:Phenylketonuria-Subgingival-plaque-(PKU-SP)-patients_vs_Phenylketonuria-Saliva-(PKU-S)-patients_UP NA Alloprevotella Atopobium Gemella Haemophilus Lachnoanaerobaculum Neisseria Oribacterium Peptostreptococcus Porphyromonas Prevotella Rothia Stomatobaculum Streptococcus Veillonella
bsdb:1086/12/2_Phenylketonuria:Phenylketonuria-Subgingival-plaque-(PKU-SP)-patients_vs_Phenylketonuria-Saliva-(PKU-S)-patients_DOWN NA Actinomyces Arachnia Campylobacter Capnocytophaga Cardiobacterium Corynebacterium Fretibacterium Fusobacterium Kingella Peptococcus Selenomonas Tannerella Olsenella
bsdb:1086/13/1_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-SP)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_UP NA Prevotella Rothia Lachnoanaerobaculum Alloprevotella Atopobium Gemella Haemophilus Stomatobaculum Streptococcus Veillonella
bsdb:1086/13/2_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-SP)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_DOWN NA Campylobacter Peptococcus Olsenella Cardiobacterium Actinomyces Selenomonas Arachnia Fretibacterium Corynebacterium Fusobacterium Capnocytophaga
bsdb:1086/14/1_Phenylketonuria:Phenylketonuria-Ch-(PKU-SP)_vs_Phenylketonuria-Ch-(PKU-S)_UP NA Alloprevotella Atopobium Gemella Haemophilus Lachnoanaerobaculum Neisseria Peptostreptococcus Porphyromonas Prevotella Streptococcus Veillonella
bsdb:1086/14/2_Phenylketonuria:Phenylketonuria-Ch-(PKU-SP)_vs_Phenylketonuria-Ch-(PKU-S)_DOWN NA Campylobacter Tannerella Peptococcus Olsenella Cardiobacterium Actinomyces Selenomonas Kingella Fretibacterium Corynebacterium Fusobacterium Capnocytophaga Arachnia
bsdb:1086/13/1_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-S)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_UP NA Alloprevotella Atopobium Gemella Haemophilus Lachnoanaerobaculum Prevotella Rothia Stomatobaculum Streptococcus Veillonella Peptostreptococcus Oribacterium
bsdb:1086/13/2_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-S)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_DOWN NA Actinomyces Arachnia Campylobacter Capnocytophaga Cardiobacterium Corynebacterium Fusobacterium Olsenella Selenomonas Tannerella
bsdb:1086/14/1_Phenylketonuria:Phenylketonuria-Children-subgingival-plaque-(PKU-Ch-SP)-patients_vs_Phenylketonuria-Children-Saliva-(PKU-Ch-S)-patients_UP NA Alloprevotella Atopobium Gemella Haemophilus Lachnoanaerobaculum Neisseria Porphyromonas Prevotella Streptococcus Veillonella Oribacterium Rothia
bsdb:1086/14/2_Phenylketonuria:Phenylketonuria-Children-subgingival-plaque-(PKU-Ch-SP)-patients_vs_Phenylketonuria-Children-Saliva-(PKU-Ch-S)-patients_DOWN NA Actinomyces Arachnia Campylobacter Capnocytophaga Cardiobacterium Corynebacterium Fretibacterium Fusobacterium Kingella Olsenella Selenomonas Tannerella
bsdb:1087/1/4_Schizophrenia:SCZ:-individuals-with-a-psychiatric-diagnosis-of-schizophrenia_vs_control-individuals-without-a-psychiatric-diagnosis-(past-or-present)_UP NA Anaerotruncus Blautia Eggerthella Escherichia Gordonibacter Hungatella
bsdb:1087/1/5_Schizophrenia:SCZ:-individuals-with-a-psychiatric-diagnosis-of-schizophrenia_vs_control-individuals-without-a-psychiatric-diagnosis-(past-or-present)_DOWN NA Romboutsia
bsdb:1087/3/1_Treatment-refractory-schizophrenia:TRS:-individuals-with-treatment-resistant-schizophrenia-taking-clozapine_vs_AAP:-individuals-with-treatment-responsive-schizophrenia-taking-atypical-antipsychotics-(not-clozapine)_UP NA Eggerthella Eisenbergiella Hungatella Ruthenibacterium
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10 changes: 5 additions & 5 deletions bugsigdb_signatures_genus_taxname_exact.gmt
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# BugSigDB 2025-01-14_13:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
# BugSigDB 2025-01-14_14:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Bacillus
bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus
bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes
Expand Down Expand Up @@ -3835,10 +3835,10 @@ bsdb:1086/11/1_Phenylketonuria:Control-Children-Subgingival-plaque-(Ctrl-Ch-SP)-
bsdb:1086/11/2_Phenylketonuria:Control-Children-Subgingival-plaque-(Ctrl-Ch-SP)-patients_vs_Control-Children-Saliva-(Ctrl-Ch-S)-patients_DOWN NA Arachnia Campylobacter Capnocytophaga Cardiobacterium Corynebacterium Fusobacterium Tannerella Selenomonas Aggregatibacter
bsdb:1086/12/1_Phenylketonuria:Phenylketonuria-Subgingival-plaque-(PKU-SP)-patients_vs_Phenylketonuria-Saliva-(PKU-S)-patients_UP NA Alloprevotella Atopobium Gemella Haemophilus Lachnoanaerobaculum Neisseria Oribacterium Peptostreptococcus Porphyromonas Prevotella Rothia Stomatobaculum Streptococcus Veillonella
bsdb:1086/12/2_Phenylketonuria:Phenylketonuria-Subgingival-plaque-(PKU-SP)-patients_vs_Phenylketonuria-Saliva-(PKU-S)-patients_DOWN NA Actinomyces Arachnia Campylobacter Capnocytophaga Cardiobacterium Corynebacterium Fretibacterium Fusobacterium Kingella Peptococcus Selenomonas Tannerella Olsenella
bsdb:1086/13/1_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-SP)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_UP NA Prevotella Rothia Lachnoanaerobaculum Alloprevotella Atopobium Gemella Haemophilus Stomatobaculum Streptococcus Veillonella
bsdb:1086/13/2_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-SP)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_DOWN NA Campylobacter Peptococcus Olsenella Cardiobacterium Actinomyces Selenomonas Arachnia Fretibacterium Corynebacterium Fusobacterium Capnocytophaga
bsdb:1086/14/1_Phenylketonuria:Phenylketonuria-Ch-(PKU-SP)_vs_Phenylketonuria-Ch-(PKU-S)_UP NA Alloprevotella Atopobium Gemella Haemophilus Lachnoanaerobaculum Neisseria Peptostreptococcus Porphyromonas Prevotella Streptococcus Veillonella
bsdb:1086/14/2_Phenylketonuria:Phenylketonuria-Ch-(PKU-SP)_vs_Phenylketonuria-Ch-(PKU-S)_DOWN NA Campylobacter Tannerella Peptococcus Olsenella Cardiobacterium Actinomyces Selenomonas Kingella Fretibacterium Corynebacterium Fusobacterium Capnocytophaga Arachnia
bsdb:1086/13/1_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-S)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_UP NA Alloprevotella Atopobium Gemella Haemophilus Lachnoanaerobaculum Prevotella Rothia Stomatobaculum Streptococcus Veillonella Peptostreptococcus Oribacterium
bsdb:1086/13/2_Phenylketonuria:Phenylketonuria-Adults-Subgingival-plaque-(PKU-Adults-S)_vs_Phenylketonuria-Adults-Saliva-(PKU-Adults-S)_DOWN NA Actinomyces Arachnia Campylobacter Capnocytophaga Cardiobacterium Corynebacterium Fusobacterium Olsenella Selenomonas Tannerella
bsdb:1086/14/1_Phenylketonuria:Phenylketonuria-Children-subgingival-plaque-(PKU-Ch-SP)-patients_vs_Phenylketonuria-Children-Saliva-(PKU-Ch-S)-patients_UP NA Alloprevotella Atopobium Gemella Haemophilus Lachnoanaerobaculum Neisseria Porphyromonas Prevotella Streptococcus Veillonella Oribacterium Rothia
bsdb:1086/14/2_Phenylketonuria:Phenylketonuria-Children-subgingival-plaque-(PKU-Ch-SP)-patients_vs_Phenylketonuria-Children-Saliva-(PKU-Ch-S)-patients_DOWN NA Actinomyces Arachnia Campylobacter Capnocytophaga Cardiobacterium Corynebacterium Fretibacterium Fusobacterium Kingella Olsenella Selenomonas Tannerella
bsdb:1088/1/1_Schizophrenia:SCZF:-patients-with-schizophrenia_vs_HCF:-healthy-controls-(no-psychiatric-diagnosis-of-schizophrenia)_UP NA Actinomyces Arthrobacter Collinsella Cupriavidus Eubacterium Leptothrix Mycoplana Pseudochrobactrum Pseudomonas Pseudoramibacter Shigella
bsdb:1088/1/2_Schizophrenia:SCZF:-patients-with-schizophrenia_vs_HCF:-healthy-controls-(no-psychiatric-diagnosis-of-schizophrenia)_DOWN NA Adlercreutzia Alistipes Aquabacterium Bacteroides Coprococcus Enterococcus Faecalibacterium Haemophilus Macellibacteroides Oscillospira Parabacteroides Prevotella Pseudobutyrivibrio Ruminococcus
bsdb:1088/2/1_Schizophrenia:SCZ:-schizophrenia-fecal-microbiota-recipient-mice_vs_HC:-healthy-control-fecal-microbiota-recipient-mice_UP NA Corynebacterium Helicobacter Odoribacter Paraprevotella Ruminiclostridium
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